New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 727778	65 (1.090)	5 (0.090)	4/224	NT	7.5%	coding (590/1020 nt)	bamD	outer membrane protein assembly factor BamD
	?	NC_002947	= 727789	63 (1.130)					coding (579/1020 nt)	bamD	outer membrane protein assembly factor BamD

TGAGCTTGAGGGTTTCCAGGCTCGTGGCGGCCAGTTCGTCCAGGTGCAGCTTCTGGTACGACTCGACCATCACCGCCAGGCCGTCACCGACGGACGGGGTTTCCTGGAAGTTTTCGACCACGTAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/727650‑727778 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtagcggcTGCCAACCGTGGCCGCTACGTGGTCGAAAACTTCCAGGAAACCCCGTCCGTCGGTGACGGCCTGGCGGTGATGGTCGAGTCGTACCAGAAGCTGCACCTGGACGAACTGGCCGCCACGAGCCTGGAAACCCTCAAGCTCAACTACCCG  <  NC_002947/727789‑727642                                                                                                                                                                                                                                                                                       TGAGCTTGAGGGTTTCCAGGCTCGTGGCGGCCAGTTCGTCCAGGTGCAGCTTCTGGTACGACTCGACCATCACCGCCAGGCCGTCACCGACGGACGGGGTTTCCTGGAAGTTTTCGACCACGTAGCGGCTGCCAACCGTGGCCGCTACGT                                                                                                                                 <  2:196703/150‑1                    GCTCGTGGCGGCCAGTTCGTCCAGGTGCAGCTTCTGGTACGACTCGACCATCACCGCCAGGCCGTCACCGACGGACGGGGTTTCCTGGAAGTTTTCGACCACGTAGCG                                                                                                                                                        <  1:664167/108‑1                    GCTCGTGGCGGCCAGTTCGTCCAGGTGCAGCTTCTGGTACGACTCGACCATCACCGCCAGGCCGTCACCGACGGACGGGGTTTCCTGGAAGTTTTCGACCACGTAGCG                                                                                                                                                        >  2:664167/1‑108                                                        GTACGACTCGACCATCACCGCCAGGCCGTCACCGACGGACGGGGTTTCCTGGAAGTTTTCGACCACGTAGCGGCTGCCAACCGTGGCCGCTACGT                                                                                                                                 >  1:1467519/1‑95                                                        GTACGACTCGACCATCACCGCCAGGCCGTCACCGACGGACGGGGTTTCCTGGAAGTTTTCGACCACGTAGCGGCTGCCAACCGTGGCCGCTACGT                                                                                                                                 <  2:1467519/95‑1                                                            GACTCGACCATCACCGCCAGGCCGTCACCGACGGACGGGGTTTCCTGGAAGTTTTCGACCACGTAGCGGCTGCCAACCGTGGCCGCTAC                                                                                                                                   <  1:1392126/89‑1                                                            GACTCGACCATCACCGCCAGGCCGTCACCGACGGACGGGGTTTCCTGGAAGTTTTCGACCACGTAGCGGCTGCCAACCGTGGCCGCTAC                                                                                                                                   >  2:1392126/1‑89                                                                                                                          GTAGCGGCTGCCAACCGTGGCCGCTACGTGGTCGAAAACTTCCAGGAAACCCCGTCCGTCGGTGACGGCCTGGCGGTGATGGTCGAGTCGTACCAGAAGCTGCACCTGGACGAACTGGCCGCCACGAGCCTGGAAACCCTCAAGCTCAAC        >  1:336901/1‑150                                                                                                                           TAGCGGCTTCCAACCGTGGCCGCTACGTGGTCGAAAACTTCCAGGAAACCCCGTCCGTCGGTGACGGCCTGGCGGTGATGGTCGAGTCGTACCAGTAGCTGCACCTGGACGAACTGGCCGCCACGAGCCTGGAAACCCTCAAGCTCAACT       <  2:632902/150‑1                                                                                                                             GCGGCTGCCAACCGTGGCCGCTACGTGGTCGAAAACTTCCAGGAAACCCCGTCCGTCGGTGACGGCCTGGCGGTGATGGTCGAGTCGTACCAGAAGCTGCACCTGGACGAACTGGCCGCCACGAGCCTGGAAACCCTCAAGCTCAACTAC     <  2:336901/150‑1                                                                                                                                GCTGCCAACCGTGGCCGCTACGTGGTCGAAAACTTCCAGGAAACCCCGTCCGTCGGTGACGGCCTGGCGGTGATGGTCGAGTCGTACCAGAAGCTGCACCTGGACGAACTGGCCGCCACGAGCCTGGAAACCCTCAAGCTCAACTACCCG  <  2:1597971/150‑1                                                                                                                                                                                                                                                                                       TGAGCTTGAGGGTTTCCAGGCTCGTGGCGGCCAGTTCGTCCAGGTGCAGCTTCTGGTACGACTCGACCATCACCGCCAGGCCGTCACCGACGGACGGGGTTTCCTGGAAGTTTTCGACCACGTAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/727650‑727778 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtagcggcTGCCAACCGTGGCCGCTACGTGGTCGAAAACTTCCAGGAAACCCCGTCCGTCGGTGACGGCCTGGCGGTGATGGTCGAGTCGTACCAGAAGCTGCACCTGGACGAACTGGCCGCCACGAGCCTGGAAACCCTCAAGCTCAACTACCCG  <  NC_002947/727789‑727642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.