New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 728713	58 (0.970)	5 (0.090)	5/226	NT	8.6%	coding (199/963 nt)	rluD	23S rRNA pseudouridine(1911/1915/1917) synthase
	?	NC_002947	= 728729	52 (0.920)					coding (215/963 nt)	rluD	23S rRNA pseudouridine(1911/1915/1917) synthase

GGCGGCCAACGCCTCGACCAGGTCGCCGCCCAATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGCCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/728560‑728713 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctggGCCTCTTGTTCGGCCTCCAGGGCAAGCTGAGAGCCACCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGCG  <  NC_002947/728729‑728586                                                                                                                                                                                                                                                                                                            GGCGGCCAACGCCTCGACCAGGTCGCCGCCCAATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGCC                                                                                                                                                      <  1:942549/150‑1     GCCAACGCCTCGACCAGGTCGCCGCCCAATTGTTCGCCGAGTACTAGCGTTCGCGGCTAGTTGCGTGGCTCCAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCGTGTTCATGGTGGCTCTCAGCTTGCCCTGG                                                                                                                                                  <  2:221251/150‑1       CAACGCCTCGACCAGGTCGCCGCCCAATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGCCCTGGGC                                                                                                                                                >  2:1638015/1‑150                      GTCGCCGCCCAATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGC                                                                                                                                                       >  1:572668/1‑128                      GTCGCCGCCCAATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGC                                                                                                                                                       <  2:572668/128‑1                            GCCCAATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGCCCTGGGCCTCTTGTTCGGCCTCCAGGGC                                                                                                                           <  1:1638015/150‑1                                                                   TCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGCCCTGGGCCTCTTGTTCGGCCTCCAGGGCAAGCTGAGA                                                                                                                  <  1:1065103/120‑1                                                                   TCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGCCCTGGGCCTCTTGTTCGGCCTCCAGGGCAAGCTGAGA                                                                                                                  >  2:1065103/1‑120                                                                                       CCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGC‑TGCCCTGGGCCTCTTGTTCGGCCTCCAGGGCAAG                                                                                                                        <  1:872063/93‑1                                                                                       CCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGC‑TGCCCTGGGCCTCTTGTTCGGCCTCCAGGGCAAG                                                                                                                        >  2:872063/1‑93                                                                                                                                                     CCCTGGGCCTCTTGTTCGGCCTCCAGGGCAAGCTGAGAGCCACCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGCG  <  2:1400983/150‑1                                                                                                                                                      CCTGGGCCTCTTGTTCGGCCTCCAGGGCAAGCTGAGAGCCACCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGC   <  1:1491619/148‑1                                                                                                                                                      CCTGGGCCTCTTGTTCGGCCTCCAGGGCAAGCTGAGAGCCACCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGC   >  2:1491619/1‑148                                                                                                                                                                                                                                                                                                            GGCGGCCAACGCCTCGACCAGGTCGCCGCCCAATTGTTCGCCGAGTACTCGCGTTCGCGGCTAACTTCGTGGATCAAAGAGGGCCGCCTGACGGTCGATGGTGCAGTCGTGCGCCCTCGAGACCTTGTTCATGGTGGCTCTCAGCTTGCCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/728560‑728713 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctggGCCTCTTGTTCGGCCTCCAGGGCAAGCTGAGAGCCACCATGAACAAGGTCTCGAGGGCGCACGACTGCACCATCGACCGTCAGGCGGCCCTCTTTGATCCACGAAGTTAGCCGCGAACGCGAGTACTCGGCGAACAATTGGGCG  <  NC_002947/728729‑728586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.