New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1073523 =	50 (0.840)	4 (0.070)	4/228	NT	7.6%	coding (1338/1452 nt)	gatA	glutamyl‑tRNA(Gln) amidotransferase subunit A
	?	NC_002947	1073561 =	50 (0.880)					coding (1300/1452 nt)	gatA	glutamyl‑tRNA(Gln) amidotransferase subunit A

TGATTCTCGGCCCGACCACGCCAAACCCGGCCTGGAAGCTTGGCGCCAAGAGCAGCGACCCGGTTGCCGCCTATCTCGAAGACGTCTACACCATCACCGCCAACCTGGCGGGCCTGCCAGGCCTGTCGATGCCTGCGGGCTTCGTCGACGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1073677‑1073523 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctgGCAGGCCCGCCAGGTTGGCGGTGATGGTGTAGACGTCTTCGAGATAGGCGGCAACCGGGTCGCTGCTCTTGGCGCCAAGCTTCCAGGCCGGGTTTGGCGTGGTCGGGCCGAGAATCAGGTCGACATCGTTGAAGGCGGCCATGAAGTCG  >  NC_002947/1073561‑1073709                                                                                                                                                                                                                                                                                                                  TGATTCTCGGCCCGACCACGCCAAACCCGGCCTGGAAGCTTGGCGCCAAGAGCAGCGACCCGGTTGCCGCCTATCTCGAAGACGTCTACACCATCACCGCCAACCTGGCGGGCCTGCCAGGCCTGTCGATGCCTGCGGGCTTCGTCGACG                                                                                                                                                            <  2:559477/150‑1                                                                                                                      CAGGCCTGTCGATGCCTGCGGGCTTCGTCGACGGCCTGGCAGGCCCGCCAGGTTGGCGGTGATGGTGTAGACGTCTTCGAGATAGGCGGCAACCGGGTCGCTGCTCTTGGCGCCAA                                                                         >  1:455466/1‑116                                                                                                                      CAGGCCTGTCGATGCCTGCGGGCTTCGTCGACGGCCTGGCAGGCCCGCCAGGTTGGCGGTGATGGTGTAGACGTCTTCGAGATAGGCGGCAACCGGGTCGCTGCTCTTGGCGCCAA                                                                         <  2:455466/116‑1                                                                                                                       AGGCCTGTCGATGCCTGCGGGCTTCGTCGACGGCCTGGCAGGCCCGCCAGGTTGGCGGTGATGGTGTAGACGTCTTCGAGATAGGCGGCAACCGGGTCGCTGCTCTTGGCGCCAAGCTTCCAGGCCGG                                                            >  1:1631792/1‑128                                                                                                                       AGGCCTGTCGATGCCTGCGGGCTTCGTCGACGGCCTGGCAGGCCCGCCAGGTTGGCGGTGATGGTGTAGACGTCTTCGAGATAGGCGGCAACCGGGTCGCTGCTCTTGGCGCCAAGCTTCCAGGCCGG                                                            <  2:1631792/128‑1                                                                                                                                                       GCCTGGCAGGCCCGCCAGGTTGGCGGTGATGGTGTAGACGTCTTCGAGATAGGCGGCAACCGGGTCGCTGCTCTTGGCGCCAAGCTTCCAGGCCGGGTTTGGCGTGGTCGGGCCGAGAATCAGGTCGACATCGTTGAAGGCGGCCATGAA      >  2:98237/1‑150                                                                                                                                                       GCCTGGCAGGCCCGCCACGTTGGCGGTGATGCTGTAGACGTCTTCGAGATAGGCGGCAACCGGGTCGCTGCTCTTGGCGCCAAGCTTCCAGGCCGGGTTTGGCGAGGTCGGGCCGAGAATCAGGTCGACATCGTTGAAGGCGGCCATGAA      <  1:178097/150‑1                                                                                                                                                        CCTGGCAGGCCCGCCAGGTTGGCGGTGATGGTGTAGACGTCTTCGAGATAGGCGGCAACCGGGTCGCTGCTCTTGGCGCCAAGCTTCCAGGCCGGGTTTGGCGTGGTCGGGCCGAGAATCAGGTCGACATCGTTGAAGGCGGCCATGAAG     <  2:532567/150‑1                                                                                                                                                           GGCAGGCCCGCCAGGTTGGCGGTGATGGTGTAGACGTCTTCGAGATAGGCGGCAACCGGGTCGCTGCTCTTGGCGCCAAGCTTCCAGGCCGGGTTTGGCGTGGTCGGGCCGAGAATCAGGTCGACATCGTTGAAGGCGGCCATGAAGTCG  <  2:1054600/150‑1                                                                                                                                                                                                                                                                                                                  TGATTCTCGGCCCGACCACGCCAAACCCGGCCTGGAAGCTTGGCGCCAAGAGCAGCGACCCGGTTGCCGCCTATCTCGAAGACGTCTACACCATCACCGCCAACCTGGCGGGCCTGCCAGGCCTGTCGATGCCTGCGGGCTTCGTCGACGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1073677‑1073523 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctgGCAGGCCCGCCAGGTTGGCGGTGATGGTGTAGACGTCTTCGAGATAGGCGGCAACCGGGTCGCTGCTCTTGGCGCCAAGCTTCCAGGCCGGGTTTGGCGTGGTCGGGCCGAGAATCAGGTCGACATCGTTGAAGGCGGCCATGAAGTCG  >  NC_002947/1073561‑1073709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.