New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1132446 =	60 (1.000)	6 (0.100)	6/234	NT	8.9%	coding (177/288 nt)	PP_0993	hypothetical protein
	?	NC_002947	1132473 =	64 (1.100)					coding (150/288 nt)	PP_0993	hypothetical protein

GCACTCGCGCTTGCCACGCTTGCAGGCGCCGCCATGGCGGCCGACAGCACGCAACCCGCAGGCAATGGCGCTGCCATGGAAAAATGCTACGGCGTCGCCATGGCAGGAAAGAACGATTGCAAGGCCGGCGCCGGCACCAGCTGCGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1132595‑1132446 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCTTGCAATCGTTCTTTCCTGCCATGGCGACGCCGTAGCATTTTTCCATGGCAGCGCCATTGCCTGCGGGTT  >  NC_002947/1132473‑1132543                                                                                                                                                                                                                               GCACTCGCGCTTGCCACGCTTGCAGGCGCCGCCATGGCGGCCGACAGCACGCAACCCGCAGGCAATGGCGCTGCCATGGAAAAATGCTACGGCGTCGCCATGGCAGGAAAGAACGATTGCAAGGCCGGCGCCGGCACCAGCTGCGCTGGC                                                                         <  1:1108734/150‑1                                                                                                                         AAGGCCGGCGCCGGCACCAGCTGCGCTGGCCTTGCAATCGTTCTTTCCTGCCATGGCGACGCCGTAGCATTT                               >  1:1197200/1‑72                                                                                                                         AAGGCCGGCGCCGGCACCAGCTGCGCTGGCCTTGCAATCGTTCTTTCCTGCCATGGCGACGCCGTAGCATTT                               <  2:1197200/72‑1                                                                                                                           GGCCGGCGCCGGCACCAGCTGCGCTGGCCTTGCAATCGTTCTTTCCTGCCATGGCGACGCCGTAGCATTTTTCCATGGCAGCGCCATTGCCTGCGGGTT  >  1:566885/1‑99                                                                                                                           GGCCGGCGCCGGCACCAGCTGCGCTGGCCTTGCAATCGTTCTTTCCTGCCATGGCGACGCCGTAGCATTTTTCCATGGCAGCGCCATTGCCTGCGGGTT  <  2:566885/99‑1                                                                                                                             CCGGCGCCGGCACCAGCTGCGCTGGCCTTGCAATCGTTCTTTC                                                        >  1:1061531/1‑43                                                                                                                             CCGGCGCCGGCACCAGCTGCGCTGGCCTTGCAATCGTTCTTTC                                                        <  2:1061531/43‑1                                                                                                                                                                                                                               GCACTCGCGCTTGCCACGCTTGCAGGCGCCGCCATGGCGGCCGACAGCACGCAACCCGCAGGCAATGGCGCTGCCATGGAAAAATGCTACGGCGTCGCCATGGCAGGAAAGAACGATTGCAAGGCCGGCGCCGGCACCAGCTGCGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1132595‑1132446 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCTTGCAATCGTTCTTTCCTGCCATGGCGACGCCGTAGCATTTTTCCATGGCAGCGCCATTGCCTGCGGGTT  >  NC_002947/1132473‑1132543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.