New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1419553 =	25 (0.420)	5 (0.110)	4/176	NT	27.5%	intergenic (‑36/+101)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	1419647 =	8 (0.180)					intergenic (‑130/+7)	PP_1242/PP_1244	hypothetical protein/hypothetical protein

GGCTGGTCGAGTCGGCGTTGATGCAGTTGCAGATGCGGTCGCATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1419727‑1419553 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcgtgcccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGT  >  NC_002947/1419647‑1419795                                                                                                                                                                                                                                                                                                                                      GGCTGGTCGAGTCGGCGTTGATGCAGTTGCAGATGCGGTCGCATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGG                                                                                                                                                                                <  1:1261158/150‑1         GAGTCGGCGTTGATGCAGTTGCAGATGCGGTCGCATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGC                                                                                                                                                                        <  2:1615842/150‑1             ctGCGTTGATGCAGTTGCAGATGCGGTCGCATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCCGGCCGCTGCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGTGTGC                                                                                                                                                                    <  1:1341454/148‑1             CGGCGTTGATGCAGTTGCAGATGCGGTCGCATTTAACCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCCTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGC                                                                                                                                                                    <  2:722769/150‑1               GCGTTGATGCAGTTGCAGATGCCGTCGGCTTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACATGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCC                                                                                                                                                                  <  2:154337/150‑1                    GATGCAGTTGCAGATGCGGTCGCATTTACCCACATAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAA                                                                                                                                                             <  2:1569906/150‑1                      TGCAGTTGCAGATGCGGTCACATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGA                                                                                                                                                           <  1:511365/150‑1                           TTGCAGATGCGGTCGCATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCG                                                                                                                                                                 >  1:551535/1‑139                           TTGCAGATGCGGTCGCATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCG                                                                                                                                                                 <  2:551535/139‑1                                           ATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGC                                                                                                                                                                        <  1:570058/116‑1                                           ATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGC                                                                                                                                                                        >  2:570058/1‑116                                           ATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGG                                                                                                                                                                                >  2:131122/1‑108                                           ATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGG                                                                                                                                                                                <  1:131122/108‑1                                                 CCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCGCCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGC                                                                                                                                                        >  2:445676/1‑126                                                 CCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCGCCACAGCCGCCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGC                                                                                                                                                        <  1:445676/126‑1                                                                                                   GCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTC                                                                              >  2:1188034/1‑150                                                                                                     CCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGA                                                                            >  2:535358/1‑150                                                                                                     CCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGC                                                                                                              >  1:1159295/1‑116                                                                                                     CCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGC                                                                                                              <  2:1159295/116‑1                                                                                                         TCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAG                                                                        >  1:996525/1‑150                                                                                                                                                CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCGCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCAT                                 >  2:25632/1‑150                                                                                                                                                 CTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATC                                >  2:454013/1‑150                                                                                                                                                 CTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAA                                                                                                                                       >  2:1506897/1‑47                                                                                                                                                 CTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAA                                                                                                                                       <  1:1506897/47‑1                                                                                                                                                      GGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGG                                                                                                                      <  1:205013/59‑1                                                                                                                                                      GGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGG                                                                                                                      >  2:205013/1‑59                                                                                                                                                          CGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGTGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAG                       <  2:511365/150‑1                                                                                                                                                             GCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGCGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTG                    >  2:258387/1‑150                                                                                                                                                               GTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGA                                                                                 <  1:156510/87‑1                                                                                                                                                               GTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGA                                                                                 >  2:156510/1‑87                                                                                                                                                                   CCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGG                                                                                                                      >  2:1215470/1‑46                                                                                                                                                                   CCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGG                                                                                                                      <  1:1215470/46‑1                                                                                                                                                                    CGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGG             >  2:212881/1‑150                                                                                                                                                                     GCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATC                          >  1:1157552/1‑136                                                                                                                                                                     GCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATC                          <  2:1157552/136‑1                                                                                                                                                                            GGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTG     <  1:535358/150‑1                                                                                                                                                                             GCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGTTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGA    <  1:722769/150‑1                                                                                                                                                                             GCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGA    <  2:1261158/150‑1                                                                                                                                                                             GCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGA    <  2:996525/150‑1                                                                                                                                                                               CTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGT  >  2:10172/1‑150                                                                                                                                                                               CTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTA                                                                <  2:1335761/88‑1                                                                                                                                                                               CTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTA                                                                >  1:1335761/1‑88                                                                                                                                                                                                                                                                                                                                      GGCTGGTCGAGTCGGCGTTGATGCAGTTGCAGATGCGGTCGCATTTACCCACAGAGCCTCACACCTTGCATTAGCAGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1419727‑1419553 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcgtgcccgcgaagaggccTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGGGTTTGAGT  >  NC_002947/1419647‑1419795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.