| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1755413 = | 57 (0.950) | 5 (0.090) | 5/232 | NT | 8.1% | intergenic (+86/‑114) | PP_1558/PP_1559 | hypothetical protein/holin |
| ? | NC_002947 | 1755435 = | 59 (1.020) | intergenic (+108/‑92) | PP_1558/PP_1559 | hypothetical protein/holin | |||||
GCCCACAGGCCAGGATCCTTCTCGGGCATGTTTGGCATCTCGATTCCTCCCTTTTGGGGAGCGGAGTAGGTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCCCGGCGAAT‑GCCGAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1755564‑1755413‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTGGGTG > NC_002947/1755435‑1755583 gcctgtgGGCCAGGATCCTTCTCGGGCATGTTTGGCATCTCGATTCCTCCCTTTTGGGGAGCGGAGTAGGTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCCCGGCGAAT‑GCCGAGG < 1:110655/143‑1GCCCACAGGCCAGGATCCTTCTCGGGCATGTTTGGCATCTCGATTCCTCCCTTTTGGGGAGCGGAGTAGGTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAGGCCCCGTCGAAT‑GCCGAGG < 2:401982/150‑1GCCCACAGGCCAGGATCCTTCTCGGGCATGTTTGGCATCTCGATTCCTCCCTTTTGGGGAGCGGAGTAGGTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCCCGGCGAAT‑GCCGAGG < 1:698960/150‑1GCCCACAGGCCAGGATCCTTCTCGGGCATGTTTGGCATCTCGATTCCTCCCTTTTGGGGAGCGGAGTAGGTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCCCGGCGAAT‑GCCGAGG > 2:1484522/1‑150 CCACAGGCCAGGATCCTTCTCGGGCATGTTTGGCATCTCGATTCCTCCCTTTTGGGGAGCGGAGTAGGTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCCCGGCGAAT‑GCCGAGGCT > 1:963578/1‑150 TCTCGATTCCTCCCTTTTGGGGAGCGGAGTAGGTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCTCGGCATTC‑GCCGGGGCTTTTTCGTTTTCGGC < 1:1327911/129‑1 TCTCGATTCCTCCCTTTTGGGGAGCGGAGTAGGTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCTCGGC‑ATTCGCCGGGGCTTTTTCGTTTTCGGC > 2:1327911/1‑129 CCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCTCGGC‑ATTCGCCGGGGCTTTTTCGTTTTCGGCTCCAC > 1:1607784/1‑94 CCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCTCGGC‑ATTCGCCGGGGCTTTTTCGTTTTCGGCTCCAC < 2:1607784/94‑1 GCCCCGGCGAAT‑GCCGAGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGG > 1:172851/1‑150 TTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTGGGTG > 2:1000992/1‑150 GCCCACAGGCCAGGATCCTTCTCGGGCATGTTTGGCATCTCGATTCCTCCCTTTTGGGGAGCGGAGTAGGTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCCCGGCGAAT‑GCCGAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1755564‑1755413‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTGGGTG > NC_002947/1755435‑1755583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |