| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1906749 | 53 (0.890) | 3 (0.060) | 3/188 | NT | 5.7% | intergenic (+47/+81) | nirD/PP_1707 | nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| ? | NC_002947 | = 1906791 | 57 (1.220) | intergenic (+89/+39) | nirD/PP_1707 | nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein | |||||
GCTCTACAAGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1906585‑1906749‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggcaagcccgctccCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAACCGCACCGGCCACACCCGCAA < NC_002947/1906791‑1906646 GCTCTACAAGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTTCCTGTGCCGGCCTCTTCGC > 1:1318236/1‑150GCTCTACAAGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGC > 1:740007/1‑150 CTCTACAAGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCG > 1:938474/1‑150 TACAAGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGC > 2:896301/1‑150 TACAAGCAGCAATTCAGCCTGCTGAGCGGGGAGTGTCTGGAGGATGCCGGGCAGGGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGC > 2:23824/1‑150 CAAGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTTCTGCCTGTGCCGGCCTCTTCGCGGGCAA < 2:745964/150‑1 CAAGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAA > 2:897555/1‑150 AGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGC < 2:1318236/150‑1 AGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGC < 2:1559253/150‑1 CACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCT > 2:147847/1‑150 ACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTC < 1:1641306/150‑1 CTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCTTGCCCGCgaa < 2:1225685/150‑4 CTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCC > 2:587139/1‑150 TTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCG > 2:823892/1‑135 TTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCG < 1:823892/135‑1 TGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCG > 2:528172/1‑110 TGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCG < 1:528172/110‑1 GGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCC < 2:740007/150‑1 GGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTT > 1:1253730/1‑130 GGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTT < 2:1253730/130‑1 GCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAA < 2:492475/150‑1 GCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAA > 2:1569379/1‑150 tgtgggaGCGGGCTTGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAAC > 1:674946/8‑150 TCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAACCG > 1:1028750/1‑150 TCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAACCG > 1:587139/1‑150 TTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCC < 1:490894/140‑1 TTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCC > 2:490894/1‑140 GGGCAAGCCCGCTCCCACAGGGTAGGTTGGCTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAACCGCACCGGC > 1:862413/1‑150 AAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAACCGCACCGGCCACA > 1:897555/1‑150 AAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAAC > 2:1238366/1‑137 AAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAAC < 1:1238366/137‑1 AGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAG > 2:1255293/1‑103 AGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAG < 1:1255293/103‑1 GCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAACCGCACCGGCCACACC > 1:1096767/1‑150 CCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAACCGCACCGGCCACACCC > 2:311929/1‑150 CCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAACCGCACCGGCCACACCC < 2:1096767/150‑1 CCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAACCGCACCGGCCACACCCG > 2:565575/1‑150 CCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAACCGCACCGGCCACACCCG > 2:1193844/1‑150 CCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAACCGCACCGGCCACACCCG > 1:23824/1‑150 CCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAACCGCACCGGCCACACCCG > 1:147847/1‑150 CCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAACCGCACCGGCCACACCCG < 2:906034/150‑1 CGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTGCACCGCCTCCCCCTTCAACCGCACCGGCCACACCCGC > 2:47146/1‑150 CTCCCACCGGCTCTCCACCGTATGACAGGGCGGTGCTGATTGCTTAGGAGCGGGCTCGCCCGCGAAGAGGCCGGAAAAGGCAGCAAAGGGGTATCACGCCACCGCCAGCTCCACCGCCTCCCCCTTCAACCGCACCGGCCACACCCGCAA < 1:743862/150‑1 GCTCTACAAGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1906585‑1906749‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggcaagcccgctccCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCAGCAAAGGGGTATCAGGCCACCGCCAGCTCCACCGCCTCCCCCTTCAACCGCACCGGCCACACCCGCAA < NC_002947/1906791‑1906646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |