New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2063203 =	66 (1.100)	7 (0.150)	6/190	NT	13.7%	intergenic (+17/‑190)	PP_1838/PP_1839	membrane protein/hypothetical protein
	?	NC_002947	2063297 =	36 (0.760)					intergenic (+111/‑96)	PP_1838/PP_1839	membrane protein/hypothetical protein

AACGAACACCAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2063373‑2063203 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgggcaagcccgcgaatgggccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCCGCAT  >  NC_002947/2063297‑2063444                                                                                                                                                                                                                                                                                                                                 AACGAACACCAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGC                                                                                                                                                                           <  1:742294/150‑1    GAACACCAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGG                                                                                                                                                                        >  2:1130412/1‑150        ACCAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAG                                                                                                                                                                    >  2:1407621/1‑150          CAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGG                                                                                                                                                                         >  2:605539/1‑143          CAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGG                                                                                                                                                                         <  1:605539/143‑1            GGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGACTCCTGGGCAATGCCTGTGGGAGCGGGCAAGCCCG                                                                                                                                                                >  2:1364539/1‑150                      GCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCC                                                                                                                                                      <  1:1193860/150‑1                      GCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGGCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCC                                                                                                                                                      >  2:934147/1‑150                                                                                             TTGCCCGCTCGCACAGGACCTGCACCCGGTGCGGACCCTGTGCAATGCCTGTGCGAGCGGGCAAGCCCTCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTCTCCGCGCCCCAAGGTCATTTATTCAGGCGTCACACTCCTGGTG                                                                               >  2:986444/1‑150                                                                                                 CCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCAC                                                                                         <  2:1332037/136‑1                                                                                                 CCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCAC                                                                                         >  1:1332037/1‑136                                                                                                     TCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGA                                                                       >  2:1176634/1‑150                                                                                                     TCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGA                                                                       <  1:1176634/150‑1                                                                                                                 TGCACAAGGTCCGAACCCTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCC                                                           >  2:444217/1‑150                                                                                                                   CACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCGAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGT                                                         >  1:983096/1‑150                                                                                                                                                         GCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAA                   <  2:742294/150‑1                                                                                                                                                         GCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAAT                                                    <  1:1532137/117‑1                                                                                                                                                         GCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAAT                                                    >  2:1532137/1‑117                                                                                                                                                           AAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGG                 <  1:148512/150‑1                                                                                                                                                            AGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGG                >  2:1262394/1‑150                                                                                                                                                                CGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACCCCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAA            <  1:986444/150‑1                                                                                                                                                                   tAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAA            >  1:1610921/2‑147                                                                                                                                                                   GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAA            <  2:1610921/147‑1                                                                                                                                                                      TGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCC      <  1:1262394/150‑1                                                                                                                                                                          CCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCCGCAT  >  2:1461134/1‑150                                                                                                                                                                                                                                                                                                                                 AACGAACACCAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2063373‑2063203 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgggcaagcccgcgaatgggccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCCGCAT  >  NC_002947/2063297‑2063444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.