| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2069216 | 49 (0.820) | 5 (0.090) | 5/218 | NT | 9.9% | intergenic (+20/‑454) | PP_t19/PP_1846 | tRNA‑Ser/group II intron‑encoding maturase |
| ? | NC_002947 | = 2069228 | 47 (0.860) | intergenic (+32/‑442) | PP_t19/PP_1846 | tRNA‑Ser/group II intron‑encoding maturase | |||||
ACTAAATTAGCGCACCTCGACAGGCCGCAAGGCTTGAAGAGAAACGGTGAAGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTATACGAGAAATCGTATCAAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACGAAAAGCCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2069062‑2069216‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcccccgTACTTTTCAGCGCGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGATTTCTCGTATACACACTTTCCAGGCGTGCTCCTTCGACCACTCGGACACTTCACCGTTTCTCTTCAAGCCTTGCGGCCT < NC_002947/2069228‑2069083 ACTAAATTAGCGCACCTCGACAGGCCGCAAGGCTTGAAGAGAAACGGTGAAGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTATACGAGAAATCGTATCAAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACGAAAAGC > 1:844705/1‑150ACTAAATTAGCGCACCTCGACAGGCCGCAAGGCTTGAAGAGAAACGGTGAAGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTATACGAGAAATCGTATCAAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACGAAAAGC < 2:1101628/150‑1ACTAAATTAGCGCACCTCGACAGGCCGCAAGGCTTGAAGAGAAACGGTGAAGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTATACGAGAAATCGTATCAAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACGAAAAGC > 2:1112042/1‑150ACTAAATTAGCGCACCTCGACAGGCCGCAAGGCTTGAAGAGAAACGGTGAAGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTATACGAGAAATCGTATCAAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACGAAAAGC > 2:646579/1‑150 TCGACAGGCCGCAAGGCTTGAAGAGAAACGGTGAAGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTATACGAGAAATCGTATCAAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACAAAAAGCCCCCGTACTTTTCAGC < 1:319523/150‑1 ACAGGCCGCAAGGCTTGAAGAGAAACGGTGAAGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTATACGAGAAATCGTATCAAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACGAAAAGCCCCC < 1:1254920/135‑1 ACAGGCCGCAAGGCTTGAAGAGAAACGGTGAAGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTATACGAGAAATCGTATCAAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACGAAAAGCCCCC > 2:1254920/1‑135 AGGCCGCAAGGCTTGAAGAGAAACGGTGAAGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTATACGAGAAATCGTATCAAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACGAAAAGCCCCCGTACTTTTCAGCGCGGG < 1:757991/150‑1 AAGAGAAACGGTGAAGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTATACGAGAAATCGTATCAAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACGAGAAGCCCCCGTACTTTTCAGCGCGGGGGCTTTTCGTAGAAT < 1:1567437/150‑1 AAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACGAAAAGCCCCCGTACTTTTCAGCGCGGGGGCTTTTCGTA < 1:374099/75‑1 AAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACGAAAAGCCCCCGTACTTTTCAGCGCGGGGGCTTTTCGTA > 2:374099/1‑75 AAAAGCCCCCGTACTTTTCAGCGCGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGATTTCTCGTATACACACTTTCCAGGCGTGCTCCTTCGACCACTCGGACACTTCACCGTTTCTCTTCAAGCCTT < 1:734194/150‑1 AAGCCCCCGTACTTTTCAGCGCGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGATTTCCAAAATACACACTTTCCAGGCGTGCTCCTTCGACCACTCGGACACTTCACCGTTTCTCTTCAAGCCTTGC > 1:101450/1‑150 CCCGTACTTTTCAGCGCGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGATTTCTGGTATACACACTTTCCAGGCGTGCTCCTTCGACCACTCGGACACTTCACCGTTTCTCTTCAAGCCTTGCGGCCT < 1:524021/150‑1 CCCGTACTTTTCAGCGCGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGATTTCTCGTATACACACTTTCCAGGCGTGCTCCTTCGACCACTCGGACACTTCACCGTTTCTCTTCAAGCCTTGCGGaga > 1:1585797/1‑147 CCCGTACTTTTCAGCGCGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGATTTCTCGTATACACACTTTCCAGGCGTGCTCCTTCGACCACTCGGACACTTCACCGTTTCTCTTCAAGCCTTGCGGCCT > 2:916760/1‑150 ACTAAATTAGCGCACCTCGACAGGCCGCAAGGCTTGAAGAGAAACGGTGAAGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTATACGAGAAATCGTATCAAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACGAAAAGCCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2069062‑2069216‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcccccgTACTTTTCAGCGCGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGATTTCTCGTATACACACTTTCCAGGCGTGCTCCTTCGACCACTCGGACACTTCACCGTTTCTCTTCAAGCCTTGCGGCCT < NC_002947/2069228‑2069083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |