New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2071205 =	52 (0.870)	8 (0.160)	8/204	NT	14.9%	intergenic (+114/+113)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
	?	NC_002947	2071278 =	47 (0.920)					intergenic (+187/+40)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor

CAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2071365‑2071205 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaagcccgctCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTCCAGCACG  >  NC_002947/2071278‑2071426                                                                                                                                                                                                                                                                                                                        CAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGG                                                                                                                                                                  <  1:689468/150‑1  AGGGGGCACCGCGTGCCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGG                                                                                                                                                                 <  1:96383/150‑1    GGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCA                                                                                                                                                               >  2:382872/1‑150        CACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCC                                                                                                                                                           >  2:1359271/1‑150        CACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCC                                                                                                                                                           <  1:1306537/150‑1                                                                                                   CCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGG                                                                        >  1:1140822/1‑142                                                                                                   CCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTCCCACAGGGCGCGAAATGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGG                                                                        <  2:1140822/142‑1                                                                                                    CCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTG                                                               >  2:1617641/1‑150                                                                                                      GCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGC                                                                                                                                   <  1:1014628/80‑1                                                                                                      GCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGC                                                                                                                                   >  2:1014628/1‑80                                                                                                      GCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCT‑‑‑‑TGTGTCGCG‑ATGGGCTGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGG                                                        <  1:22149/150‑1                                                                                                                                  ACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTA                                                      <  2:399818/129‑1                                                                                                                                  ACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTA                                                      >  1:399818/1‑129                                                                                                                                               CTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACA                                                          <  1:620171/112‑1                                                                                                                                               CTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACA                                                          >  2:620171/1‑112                                                                                                                                                     GGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAG                                                                                              <  1:1628275/70‑1                                                                                                                                                     GGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAG                                                                                              >  2:1628275/1‑70                                                                                                                                                     GGGCAAGCCCGCGCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTCTCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGC              <  1:734945/150‑1                                                                                                                                                       GCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTT            >  2:417867/1‑150                                                                                                                                                       GCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTT            <  1:813598/150‑1                                                                                                                                                        CAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTG           <  2:1306537/150‑1                                                                                                                                                        CAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTG           <  1:1292047/150‑1                                                                                                                                                             CCGCTCCAACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTCCAG      >  2:808862/1‑150                                                                                                                                                               GCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTCCAGCA    <  1:1386619/150‑1                                                                                                                                                                 TCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTCCAGCACG  >  1:32134/1‑150                                                                                                                                                                                                                                                                                                                        CAGGGGGCACCGCGTACCGCTCGGCTTTCGGCTTCGATCAGCTTCTAGATTGCCGGGGCCGCTCTGCGGCCCTTTCGCGACCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2071365‑2071205 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaagcccgctCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTCCAGCACG  >  NC_002947/2071278‑2071426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.