| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2557498 = | 56 (0.940) | 4 (0.070) | 4/230 | NT | 7.0% | intergenic (‑145/‑286) | PP_2241/fepA | MFS transporter/ferric enterobactin transport system outer membrane subunit |
| ? | NC_002947 | 2557535 = | 53 (0.920) | intergenic (‑182/‑249) | PP_2241/fepA | MFS transporter/ferric enterobactin transport system outer membrane subunit | |||||
GCCGGACTGCCCCCTAAATTTGATAAGCCTTCGCGGTCGCCTGTAGGAGCGGGTTTACCCGCGAAACGGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2557570‑2557498‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgaCCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGTTCAGTAACAAACATGTAAACTTCGTAAATAAGATTTACTCGCATTTGCGATTCTCTATATTTAC > NC_002947/2557535‑2557680 GCCGGACTGCCCCCTAAATTTGATAAGCCTTCGCGGTCGCCTGTAGGAGCGGGTTTACCCGCGAAACGGGC < 1:857759/71‑1GCCGGACTGCCCCCTAAATTTGATAAGCCTTCGCGGTCGCCTGTAGGAGCGGGTTTACCCGCGAAACGGGC > 2:857759/1‑71 TCGCCTGTAGGAGCGGGTTTACCCGCGAAACGGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGG > 1:1447884/1‑96 TCGCCTGTAGGAGCGGGTTTACCCGCGAAACGGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGG < 2:1447884/96‑1 GCCTGTAGGAGCGGGTTTACCCGCGAAACGGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCA < 1:1424793/110‑1 GCCTGTAGGAGCGGGTTTACCCGCGAAACGGGCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCA > 2:1424793/1‑110 GCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGTTCAGTAACAAACATGTAAACTTCGTAAATAAGATTTACTCGCATTTGCGATTCTCTATATTTAC < 2:1519144/150‑1 GCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGTTCAGTAACAAACATGTAAACTTCGTAAATAAGATTTACTCGCATTTGCGATTCTCTA > 1:894767/1‑143 GCGACCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGTTCAGTAACAAACATGTAAACTTCGTAAATAAGATTTACTCGCATTTGCGATTCTCTA < 2:894767/143‑1 GCCGGACTGCCCCCTAAATTTGATAAGCCTTCGCGGTCGCCTGTAGGAGCGGGTTTACCCGCGAAACGGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2557570‑2557498‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgaCCGCGAAGGCTTATCAAATTTAGGGGGCAGTCCGGCGTGGCTCACAAGCTTCGCTGTGGCAAAGATCACGGTTCAGCAAAGTTCAGTAACAAACATGTAAACTTCGTAAATAAGATTTACTCGCATTTGCGATTCTCTATATTTAC > NC_002947/2557535‑2557680 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |