New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2664051 =	48 (0.800)	6 (0.130)	6/192	NT	12.7%	intergenic (+33/‑130)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase
	?	NC_002947	2664132 =	44 (0.920)					intergenic (+114/‑49)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase

AGGTCGGTGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2664221‑2664051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGC  >  NC_002947/2664132‑2664279                                                                                                                                                                                                                                                                                                                                 AGGTCGGTGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCA                                                                                                                                                                           >  2:954284/1‑150 AGGTCGGTGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCA                                                                                                                                                                           <  2:165857/150‑1        TGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGG                                                                                                                                                                    <  1:801161/150‑1              GCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACGAGGCCGGGTGCATTCGCGGGCACGC                                                                                                                                                              >  2:1238405/1‑150                AGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCC                                                                                                                                                            >  1:865449/1‑150                     CTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCC                                                                                                                                                       >  2:680203/1‑150                      TTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCC                                                                                                                                                      >  2:147818/1‑150                                                                       GAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCC                                                                                                                                                       <  2:736119/100‑1                                                                       GAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCC                                                                                                                                                       >  1:736119/1‑100                                                                                                        CCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGC                                                                    >  1:1537173/1‑150                                                                                                         CCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCA                                                                   <  1:1216293/150‑1                                                                                                         CCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCA                                                                   >  2:1216293/1‑150                                                                                                          CGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATT                                                                                                                                                                         >  2:1191470/1‑47                                                                                                          CGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATT                                                                                                                                                                         <  1:1191470/47‑1                                                                                                             GAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGA                                                                                                    >  1:1153951/1‑113                                                                                                             GAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGA                                                                                                    <  2:1153951/113‑1                                                                                                                   GTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAG                                                                                                                                                  >  2:1514696/1‑61                                                                                                                   GTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAG                                                                                                                                                  <  1:1514696/61‑1                                                                                                                             GCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGAC                                               <  2:1537173/150‑1                                                                                                                                                      ATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCT                                                                           >  1:277646/1‑97                                                                                                                                                      ATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCT                                                                           <  2:277646/97‑1                                                                                                                                                       TTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGAC                                                              >  2:131316/1‑109                                                                                                                                                       TTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGAC                                                              <  1:131316/109‑1                                                                                                                                                          GCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCC                  >  1:121029/1‑150                                                                                                                                                             GGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGG               <  2:121029/150‑1                                                                                                                                                                  GCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCT          >  1:1216322/1‑150                                                                                                                                                                    CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACGGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTAC        >  1:828764/1‑150                                                                                                                                                                      GCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAA                                                                                                <  1:1397749/60‑1                                                                                                                                                                      GCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAA                                                                                                >  2:1397749/1‑60                                                                                                                                                                        TCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACG    <  2:259531/150‑1                                                                                                                                                                          CCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGC  >  1:1098916/1‑150                                                                                                                                                                          CCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGC  >  2:233205/1‑150                                                                                                                                                                          CCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGC  >  2:1611554/1‑150                                                                                                                                                                          CCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCG                >  1:1608427/1‑136                                                                                                                                                                          CCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCG                <  2:1608427/136‑1                                                                                                                                                                                                                                                                                                                                 AGGTCGGTGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2664221‑2664051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGC  >  NC_002947/2664132‑2664279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.