New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2691928	67 (1.120)	4 (0.070)	4/216	NT	6.2%	coding (46/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein
	?	NC_002947	= 2691938	60 (1.110)					coding (56/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein

CCGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2691772‑2691928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgggcctggGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTGTCGCGGTAAAGCCCGGCCGGCAGCGCACGCGGTTGCGCCACT  <  NC_002947/2691938‑2691795                                                                                                                                                                                                                                                                                                               CCGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTG                                                                                                                                                         >  2:830832/1‑150  CGATTCCCATCTACGGTGTGGTAGTGGCGCAAAGCCTGGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGG                                                                                                                                                        >  1:794177/1‑150        caataTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTTCCGGCCGGGCTTTACCGCGGCACCCTCAGAGTGACCGTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACATTTCATATTGCGTCCTCGCATGCCTGGGCCTGG                                                                                                                                                  >  2:269529/6‑150                                acCCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCT                                                                                                                                                    <  1:469434/122‑1                                AACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCT                                                                                                                                                    >  2:469434/1‑124                                                                           AGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCC                                                                                                                                                           >  1:1185394/1‑74                                                                           AGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCC                                                                                                                                                           <  2:1185394/74‑1                                                                                               CACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGA                                                                                                                      <  1:1383397/91‑1                                                                                               CACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGA                                                                                                                      >  2:1383397/1‑91                                                                                                     AGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAG                                                                                                                     <  1:1416373/86‑1                                                                                                     AGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAG                                                                                                                     >  2:1416373/1‑86                                                                                                          ACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGG                                                                                                                                                        >  1:1215868/1‑46                                                                                                          ACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGG                                                                                                                                                        <  2:1215868/46‑1                                                                                                                                                    CTGGGCCTGGGAAGCAAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAACGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTGTCGCGGTAAAGCCCGGCCGGCAGCGCACGCGGTTGCGC      <  2:752576/150‑1                                                                                                                                                     TGGGCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTGTCGCGGTAAAGCCCGGCCGGCAGCGCACGCGGTTGCGCC     >  2:509452/1‑150                                                                                                                                                        GCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTGTCGCGGTAAAGCCCGGCCGGCAGCGCACGCGGTTGCGCCACT  >  2:946914/1‑150                                                                                                                                                          CTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGT                                                                                                    <  2:329692/50‑1                                                                                                                                                          CTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGT                                                                                                    >  1:329692/1‑50                                                                                                                                                                                                                                                                                                               CCGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2691772‑2691928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgggcctggGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTGTCGCGGTAAAGCCCGGCCGGCAGCGCACGCGGTTGCGCCACT  <  NC_002947/2691938‑2691795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.