| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2753962 = | 72 (1.200) | 6 (0.100) | 6/232 | NT | 8.0% | coding (245/3147 nt) | czcA‑II | cation efflux system protein |
| ? | NC_002947 | 2753984 = | 68 (1.170) | coding (267/3147 nt) | czcA‑II | cation efflux system protein | |||||
ATCGGCCCCATGCCCGCCTCGATGCCCTCAGGCAATTGCTCGCGGGCCACCTGCAGGCGCTCGTTGACCAGTTGGCGGGCGAAGAAGATATCGGTGCCATCATCGAAAATGACCGTGACTTGCGACAGGCCCGAGCGCGACAGCGAGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2754112‑2753962‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggCCTGTCGCAAGTCACGGTCATTTTCGATGATGGCACCGATATCTTCTTCGCCCGCCAACTGGTCAACGAGCGCCTGCAGGTGGCCCGCGAGCAATTGCCTGAGGGCATCGAGGCGGGC > NC_002947/2753984‑2754101 ATCGGCCCCATGCCCGCCTCGATGCCCTCAGGCAATTGCTCGCGGGCCACCTGCAGGCGCTCGTTGACCAGTTGGCGGGCGAAGAAGATATCGGTGCCATCATCGAAAATGACCGTGACTTGCGACAGGCCCGAGCGCGACAGCGAGCGG < 2:1481093/150‑1ATCGGCCCCATGCCCGCCTCGATGCCCTCAGGCAATTGCTCGCGGGCCACCTGCAGGCGCTCGTTGACCAGTTGGCGGGCGAAGAAGATATCGGTGCCATCATCGAAAATGACCGTGACTTGCGACAGGCCCGAGCGCGACAGCGAGCGG > 2:727397/1‑150 GCGCTCGTTGACCAGTTGGCGGGCGAAGAAGATATCGGTGCCATCATCGAAAATGACCGTGACTTGCGACAGGCCCGAGCGCGACAGCGAGCGGG < 1:736825/95‑1 GCGCTCGTTGACCAGTTGGCGGGCGAAGAAGATATCGGTGCCATCATCGAAAATGACCGTGACTTGCGACAGGCCCGAGCGCGACAGCGAGCGGG > 2:736825/1‑95 ACAGGCCCGAGCGCGACAGCGAGCGGGCCTGTCGCACGTCACGGTCATTTTCGATGATGGCACCGATATCTTCTTCGCCCGCCAACTGGTCAACGAGCGCCTGCAGGTGGCCCGCGAGCAATTGCCTGAGGGCATCGAGGCGGGC < 2:1123409/145‑1 ACAGGCCCGAGCGCGACAGCGAGCGGGCCTGTCGCAAGTCACGGTCATTTTCGATGATGGCACCGATATCTTCTTCGCCCGCCAACTGGTCAACGAGCGCCTGCAGGTGGCCCGCGAGCAATTGCCTGAGGGCATCGAGGCGGGC > 1:1123409/1‑145 AGGCCCGAGCGCGACAGCGAGCGGGCCTGTCGCAAGTCACGGTCATTTTCGATGATGGCACCGATATCTT > 1:309852/1‑70 AGGCCCGAGCGCGACAGCGAGCGGGCCTGTCGCAAGTCACGGTCATTTTCGATGATGGCACCGATATCTT < 2:309852/70‑1 GCCCGAGCGCGACAGCGAGCGGGCCTGTCGCAAGTCACGGTCATTTTC < 1:701507/48‑1 GCCCGAGCGCGACAGCGAGCGGGCCTGTCGCAAGTCACGGTCATTTTC > 2:701507/1‑48 ATCGGCCCCATGCCCGCCTCGATGCCCTCAGGCAATTGCTCGCGGGCCACCTGCAGGCGCTCGTTGACCAGTTGGCGGGCGAAGAAGATATCGGTGCCATCATCGAAAATGACCGTGACTTGCGACAGGCCCGAGCGCGACAGCGAGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2754112‑2753962‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggCCTGTCGCAAGTCACGGTCATTTTCGATGATGGCACCGATATCTTCTTCGCCCGCCAACTGGTCAACGAGCGCCTGCAGGTGGCCCGCGAGCAATTGCCTGAGGGCATCGAGGCGGGC > NC_002947/2753984‑2754101 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |