| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2808573 = | 60 (1.000) | 6 (0.110) | 6/212 | NT | 10.8% | noncoding (430/434 nt) | PP_mr35 | cspA regulatory region |
| ? | NC_002947 | 2808606 = | 46 (0.870) | noncoding (397/434 nt) | PP_mr35 | cspA regulatory region | |||||
ACACTTCAAAGCCATCGAATCTGACGGCTTCAAGAGCCTGAAAGAAGGCCAGACTGTTTCCTTCGTCGCCGAGCGCGGCCAGAAGGGCATGCAGGCTGCACAGGTTCGTCCGGAGTAATTCGGATAGCTGTAAAAAAACCCGCCCTTGTGGCGGGTTTTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2808735‑2808573‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgggtttttttaCAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCTTTGAAGTGTACGAACAG > NC_002947/2808606‑2808743 ACACTTCAAAGCCATCGAATCTGACGGCTTCAAGAGCCTGAAAGAAGGCCAGACTGTTTCCTTCGTCGCCGAGCGCGGCCAGAAGGGCATGCAGGCTGCACAGGTTCGTCCGGAGTAATTCGGATAGCTGTAAAAAAACCCGCCCTTGTG > 1:245020/1‑150ACACTTCAAAGCCATCGAATCTGACGGCTTCAAGAGCCTGAAAGAAGGCCAGACTGTTTCCTTCGTCGCCGAGCGCGGCCAGAAGGGCATGCAGGCTGCACAGGTTCGTCCGGAGTAATTCGGATAGCTGTAAAAAAACCCGCCCTTGTG < 2:1281962/150‑1ACACTTCAAAGCCATCGAATCTGACGGCTTCAAGAGCCTGAAAGAAGGCCAGACTGTTTCCTTCGTCGCCGAGCGCGGCCAGAAGGGCATGCAGGCTGCACAGGTTCGTACTGGGTAATTCGGATAGCTGTAAAAAAACCCGCCCTGGTG > 1:1577047/1‑150 ACTTCAAAGCCATCGAATCTGACGGCTTCAAGAGCCTGAAAGAAGGCCAGACTGTTTCCTTCGTCGCCGAGCGCGGCCAGAAGGGCATGCAGGCTGCACAGGTTCGTCCGGAGTAATTCGGATAGCTGTAAAAAAACCCGCCCTTGTGGC > 1:202872/1‑150 CAAAGCCATCGAATCTGACGGCTTCAAGAGCCTGAAAGAAGGCCAGACTGTTTCCTTCGTCGCCGAGCGCGGCCAGAAGGGCATGCAGGCTGCACAGGTTCGTCCGGAGTAATTCGGATAGCTGTAAAAAAACCCGCCCTTGTGGCGGGg > 1:210861/1‑149 CAAAGCCATCGAATCTGACGGCTTCAAGAGCCTGAAAGAAGGCCAGACTGTTTCCTTCGTCGCCGAGCGCGGCCAGAAGGGCATGCAGGCTGCACAGGTTCGTCCGGAGTAATTCGGAGAGCTGTAAAAAAACCCGCCCTTGTGGCGGGg > 1:258572/1‑149 GCCATCGAATCTGACGGCTTCAAGAGCCTGAAAGAAGGCCAGACTGTTTCCTTCGTCGCCGAGCGCGGCCAGAAGGGCATGCAGGCTGCACAGGTTCGTCCGGAGTAATTCGGATAGCTGTAAAAAAACCCGCCCTTGTGGCGGGTTTTT < 2:1450265/150‑1 ATCGAATCTGACGGCTTCAAGAGCCTGAAAGAAGGCCAGACTGTTTCCTTCGTCGCCGAGCGCGGCCAGAAGGGCATGCAGGCTGCACAGGTTCGTCCGGAGTAATTCGGATAGCTGTAAAAAAACCCGCCCTTGTGGCGGGTTTTTTTA > 2:976384/1‑150 ATCGAATCTGACGGCTTCAAGAGCCTGAAAGAAGGCCAGACTGTTTCCTTCGTCGCCGAGCGCGGCCAGAAGGGCATGCAGGCTGCACAGGTTCGTCCGGAGTAATTCGGATAGCTGTAAAAAAACCCGCCCTTGTGGCGG < 1:986857/141‑1 ATCGAATCTGACGGCTTCAAGAGCCTGAAAGAAGGCCAGACTGTTTCCTTCGTCGCCGAGCGCGGCCAGAAGGGCATGCAGGCTGCACAGGTTCGTCCGGAGTAATTCGGATAGCTGTAAAAAAACCCGCCCTTGTGGCGG > 2:986857/1‑141 ATCGAATCTGACGGCTTCAAGAGCCTGAAAGAAGGCCAGACTGTTTCCTTCGTCGCCGAGCGCGGCCAGAAGGGCATGCAGGCTGCACAGGTTCGTCCGGAGTAATTCGGATAGCTGTAAAAAAACCCGCCCTTGCGGCGGGTTTTTTTA > 2:782514/1‑150 GGCTTCAAGAGCCTGAAAGAAGGCCAGACTGTTTCCTTCGTCGCCGAGCGCGGCCAGAAGGGCATGCAGGCTGCACAGGTTCGTCCGGAGTAATTCGGATAGCTGTAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAA < 2:311894/150‑1 AGAAGGCCAGACTGTTTCCTTCGTCGCCGAGCGCGGCCAGAAGGGCATGCAGGCTGCACAGGTTCGTCCGGAGTAATTCGGATAGCTGTAAAAAAACCCGCCCTTGTGGCGGGTTTT < 2:1505329/117‑1 AGAAGGCCAGACTGTTTCCTTCGTCGCCGAGCGCGGCCAGAAGGGCATGCAGGCTGCACAGGTTCGTCCGGAGTAATTCGGATAGCTGTAAAAAAACCCGCCCTTGTGGCGGGTTTT > 1:1505329/1‑117 TGTAAAAAAACCCGCCCTTGTGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGACCGCATGCCCTTCTGGCCGCGCTAGGAGAAGAAAAAAAACAACGAGCCTTCTGTCAGGCTCTTGAAGCCGTCAGATTgg > 1:365366/1‑148 AAAAAACCCGCCCTTGTGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTATTGAAGCCGTCAGATTCGATGG < 2:1014037/150‑1 AAAAACCCGCCCTTGTGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGA < 1:1049120/52‑1 AAAAACCCGCCCTTGTGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGA > 2:1049120/1‑52 AAAACCCGCCCTTGTGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCT > 1:289341/1‑150 CGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCTTTGAAGTGTACGAACAG < 1:311894/150‑1 TTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCT < 1:384521/103‑1 TTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCT > 2:384521/1‑103 ACACTTCAAAGCCATCGAATCTGACGGCTTCAAGAGCCTGAAAGAAGGCCAGACTGTTTCCTTCGTCGCCGAGCGCGGCCAGAAGGGCATGCAGGCTGCACAGGTTCGTCCGGAGTAATTCGGATAGCTGTAAAAAAACCCGCCCTTGTGGCGGGTTTTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2808735‑2808573‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgggtttttttaCAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCTTTGAAGTGTACGAACAG > NC_002947/2808606‑2808743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |