| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3051144 = | 52 (0.870) | 3 (0.050) | 3/228 | NT | 5.7% | coding (933/1164 nt) | PP_2663 | hypothetical protein |
| ? | NC_002947 | 3051188 = | 49 (0.860) | coding (977/1164 nt) | PP_2663 | hypothetical protein | |||||
CTCCGTAGGTGTTGAAGCCAATCACCCGTTGCTCGCGCAGGAACGCGCCGACCGGCTCCAGGCCGCGGTGGGCCTCCAGTTCCAGCCGCCGCAGGAAACAATCACAACCGATGGTCAGCAGCAGCGGTCCGAGACGCTGGTGCAGGCCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3051295‑3051144‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatcgGTTGTGATTGTTTCCTGCGGCGGCTGGAACTGGAGGCCCACCGCGGCCTGGAGCCGGTCGGCGCGTTCCTGCGCGAGCAACGGGTGATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGG > NC_002947/3051188‑3051336 CTCCGTAGGTGTTGAAGCCAATCACCCGTTGCTCGCGCAGGAACGCGCCGACCGGCTCCAGGCCGCGGTGGGCCTCCAGTTCCAGCCGCCGCAGGAATCAATCACAACCGATGGTCAGCAGCAGCGGTCCGAGACGCTGGTGCAGGCCAT < 2:241274/150‑1CTCCGTAGGTGTTGAAGCCAATCACCCGTTGCTCGCGCAGGAACGCGCCGACCGGCTCCAGGCCGCGGTGGGCCTCCAGTTCCAGCCGCCGCAGGAAACAATCACAACCGATGGTCAGCAGCAGCGGTCCGAGACGCTGGTGCAGGCCAT < 1:1471531/150‑1 TCCGTAGGTGTTGAAGCCAATCACCCGTTGCTCGCGCAGGAACGCGCCGACCGGCTCCAGGCCGCGGTGGGCCTCCAGTTCCAGCCGCCGCAGGAAACAATCACAACCGATGGTCAGCAGCAGCGGTCCGAGACGCTGGTGCAGGCCATC > 1:1078248/1‑150 TCCGTAGGTGTTGAAGCCAATCACCCGTTGCTCGCGCAGGAACGCGCCGACCGGCTCCAGGCCGCGGTGGGCCTCCAGTTCCAGCCGCCGCAGGAAACAATCACAACCGATGGTCAGCAGCAGCGGTCCGAGACGCTGGTGCAGGCCATC < 1:132741/150‑1 TCCGTAGGTGTTGAAGCCAATCACCCGTTGCTCGCGCAGGAACGCGCCGACCGGCTCCAGGCCGCGGTGGGCCTCCAGTTCCAGCCGCCGCAGGAAACAATCACAACCGATGGTCAGCAGCAGCGGTCCGAGACGCTGGTGCAGGCCATC > 2:1234135/1‑150 ACAATCACAACCGATGGTCAGCAGCAGCGGTCCGAGACGCTGGTGCAGGCCATCGGTTGTGATTGTTTCCTGCGGCGGCTGGAACTGGAGGCCCACCGCGGCCTGGAGCCGGTCGGCGCGTTCCTGCGCGAGCAACGGGTGATTGGCTTC > 2:1575617/1‑150 AACCGATGGTCAGCAGCAGCGGTCCGAGACGCTGGTGCAGGCCATCGGTTGTGATTGTTTCCTGCGGCGGCTGGAACTGGAGGCCCACCGCGGCCTGGAGCCGGTCGG < 1:1085344/108‑1 AACCGATGGTCAGCAGCAGCGGTCCGAGACGCTGGTGCAGGCCATCGGTTGTGATTGTTTCCTGCGGCGGCTGGAACTGGAGGCCCACCGCGGCCTGGAGCCGGTCGG > 2:1085344/1‑108 CCATCGGTTGTGATTGTTTCCTGCGGCGGCTGGAACTGGAGGCCCACCGCGGCCTGGAGCCGGTCGGCGC > 2:1466046/1‑70 CCATCGGTTGTGATTGTTTCCTGCGGCGGCTGGAACTGGAGGCCCACCGCGGCCTGGAGCCGGTCGGCGC < 1:1466046/70‑1 ATCGGTTGTGATTGTTTCCTGCGGCGGCTGGAACTGGAGGCCCACCGCGGCCTGGAGCCGGTCGGCGCGTTCCTGCGCGAGCAACGGGTGATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCA > 2:1366120/1‑127 ATCGGTTGTGATTGTTTCCTGCGGCGGCTGGAACTGGAGGCCCACCGCGGCCTGGAGCCGGTCGGCGCGTTCCTGCGCGAGCAACGGGTGATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCA < 1:1366120/127‑1 ATCGGTTGTGATTGTTTCCTGCGGCGGCTGGAACTGGAGGCCCACCGCGGCCTGGAGCCGGTCGGCGCGTTCCTGCGCGAGCAACGGGTGATTGGCTTCAACACCTACGGA < 1:893816/111‑1 ATCGGTTGTGATTGTTTCCTGCGGCGGCTGGAACTGGAGGCCCACCGCGGCCTGGAGCCGGTCGGCGCGTTCCTGCGCGAGCAACGGGTGATTGGCTTCAACACCTACGGA > 2:893816/1‑111 ATCGGTTGTGATTGTTTCCTGCGGCGGCTGGAACTGGAGGCCCACCGCGGCCTGGAGCCGGTCGGCGCGTTCCTGCGCGAGCAACGGGTGATTGGCTTCAACACCTAC > 2:337515/1‑108 ATCGGTTGTGATTGGTTCCTGCGGCGGCTGGAACTGGAGGCCCACCGCGGCCTGGAGCCGGTCGGCGCGTTCCTGCGCGAGCAACGGGTGATTGGCTTCAACACCTAC < 1:337515/108‑1 GGTTGTGATTGTTTCCTGCGGCGGCTGGAACTGGAGGCCCACCGCGGCCTGGAGCCGGTCGGCGCGTTCCTGCGCGAGCAACGGGTGATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGG < 2:736606/150‑1 CTCCGTAGGTGTTGAAGCCAATCACCCGTTGCTCGCGCAGGAACGCGCCGACCGGCTCCAGGCCGCGGTGGGCCTCCAGTTCCAGCCGCCGCAGGAAACAATCACAACCGATGGTCAGCAGCAGCGGTCCGAGACGCTGGTGCAGGCCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3051295‑3051144‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatcgGTTGTGATTGTTTCCTGCGGCGGCTGGAACTGGAGGCCCACCGCGGCCTGGAGCCGGTCGGCGCGTTCCTGCGCGAGCAACGGGTGATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGG > NC_002947/3051188‑3051336 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |