New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3517062	54 (0.900)	6 (0.100)	6/238	NT	10.1%	intergenic (+1059/‑76)	PP_5576/PP_5578	hypothetical protein/hypothetical protein
	?	NC_002947	4625973 =	NA (NA)					intergenic (+4520/+44)	PP_5654/PP_4091	phosphotriesterase/transposase

AGGGCCATTCGCCTGACCGCGTTGGTCAACGAGAACAACGTCACGTACAGCTGCGCAGATACGGATCAGATTGCTACGGCGCTTGAGCTGACTGATCGCGAGGGTGAGATTGTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3516947‑3517062 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAGCCACGTATA  >  NC_002947/4625973‑4626121                                                                                                                                                                                                                                                                           AGGGCCATTCGCCTGACCGCGTTGGTCAACGAGAACAACGTCACGTACAGCTGCGCAGATACGGATCAGATTGCTACGGCGCTTGAGCTGACTGATCGCGAGGGTGAGATTGTTTGTAACCGATCCATGAACCCCACCTACCACAAGGTG                                                                                                                     <  1:701361/150‑1   GGCCATTCGCCTGACCGCGTTGGTCAACGAGAACAACGTCACGTACAGCTGCGCAGATACGGATCAGATTGCTACGGCGCTTGAGCTGACTGATCGCGAGGGTGAGATTGTTTGTAACCGATCCATGAACCCCACCTACCACAAGGTGGA                                                                                                                   >  1:1500022/1‑150                  CGCGTTGGTCAACGAGAACAACGTCACGTACAGCTGCGCAGATACGGATCAGATTGCTACGGCGCTTGAGCTGACTGATCGCGAGGGTGAGATTGTTTGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGT                                                                                                    <  2:1500022/150‑1                                                                                 GCTTGAGCTGACTGATCGCGAGGGTGAGATTGTTTGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGC                                     >  1:337962/1‑150                                                                                       GCTGACTGATCGCGAGGGTGAGATTGTTTGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGG                                                                          >  1:411151/1‑107                                                                                       GCTGACTGATCGCGAGGGTGAGATTGTTTGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGG                                                                          <  2:411151/107‑1                                                                                                                    GTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGATACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAGCCACGTATA  >  2:188815/1‑150                                                                                                                                                                                                                                                                           AGGGCCATTCGCCTGACCGCGTTGGTCAACGAGAACAACGTCACGTACAGCTGCGCAGATACGGATCAGATTGCTACGGCGCTTGAGCTGACTGATCGCGAGGGTGAGATTGTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3516947‑3517062 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAGCCACGTATA  >  NC_002947/4625973‑4626121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.