New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3622255 =	59 (0.990)	4 (0.070)	4/216	NT	7.0%	intergenic (‑175/+51)	PP_3192/PP_3193	hypothetical protein/hypothetical protein
	?	NC_002947	3622301 =	54 (1.000)					intergenic (‑221/+5)	PP_3192/PP_3193	hypothetical protein/hypothetical protein

GGGCGCCATCGGCGTCAGTGGCGATACCTCGGACAACGATGAGCGGTGCGCGCTGCTGGCCATCGAAGCGCTCGGGCTGATCGGCGACAGCGGCGATCTTCAGCCCTGAGCCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3622414‑3622255 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggccaaggcgTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCTGCATCGCGCAGAAGAACGCC  >  NC_002947/3622301‑3622449                                                                                                                                                                                                                                                                                                                       GGGCGCCCTCGGCGTCAGTGGCGATACCTCGGACAACGATGAGCGGTGCGCGCTGTTGGCCATCGAAGCGCTCGGGCTGATCGGCGACAGCGGCGATCTTCAGCCCTGAGCCAACTCCTTGGCCTGTTCCACCATCAATTGGCGGAGCCA                                                                                                                                                                 <  2:805849/150‑1       CATCGGCGTCAGTGGCGATACCTCGGACAACGATGAGCGGTGCGCGCTGCTGGCCATCGAAGCGCTCGGGCTGATCGGCGACAGCGGCGATCTTCAGCCCTGAGCCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAA                                                                                                                                                           >  2:301833/1‑150        ATCGGCGTCAGTGGCGATACCTCGGACAACGATGAGCGGTGCGCGCTGCTGGCCATCGAAGCGCTCGGGCTGATCGGCGACAGCGGCGATCTTCAGCCCTGAGCCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAG                                                                                                                                                          >  1:349323/1‑150        ATCGGCGTCAGTGGCGATACCTCGGACAACGATGAGCGGTGCGCGCTGCTGGCCATCGAAGCGCTCGGGCTGATCGGCGACAGCGGCGATCTTCAGCCCTGAGCCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAG                                                                                                                                                          <  2:1293768/150‑1         TCGGCGTCAGTGGCGATACCTCGGACAACGATGAGCGGTGCGCGCTGCTGGCCATCGAAGCGCTCGGGCTGATCGGCGACAGCGGCGATCTTCAGCCCTGAGCCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGG                                                                                                                                                         >  2:640194/1‑150                                                                                       ACAGCGGCGATCTTCAGCCCTGAGCCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGC                                                                                                                                                        >  2:787101/1‑73                                                                                       ACAGCGGCGATCTTCAGCCCTGAGCCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGC                                                                                                                                                        <  1:787101/73‑1                                                                                                               CCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATG                                                                                                 <  1:1009096/104‑1                                                                                                               CCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATG                                                                                                 >  2:1009096/1‑104                                                                                                                       TTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGC                                                                                                        >  1:553291/1‑89                                                                                                                       TTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGC                                                                                                        <  2:553291/89‑1                                                                                                                                                        GCCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCTGCATCGCGCAGA          <  2:867942/150‑1                                                                                                                                                         CCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCTGCATCGCGCAGAA         <  1:1223031/150‑1                                                                                                                                                         CCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCTGCATCGCGCAGAA         <  2:603542/150‑1                                                                                                                                                         CCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGA                            >  1:89992/1‑131                                                                                                                                                         CCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGA                            <  2:89992/131‑1                                                                                                                                                         CCAAGGCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATAAACACTGAATCCTATGGGGCCCAGCAGGCGACCTTCTGCATCGCGCAGAA         >  2:675925/1‑150                                                                                                                                                              GCGTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCTGCATCGCGCAGAAGAACG    >  1:574200/1‑150                                                                                                                                                                GTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCTGCATCGCGCAGAAGAACGCC  >  1:186091/1‑150                                                                                                                                                                GTTGGCTCACGTCTGAAGATCGCCCCCGTCGACCCACACCCCGAGCTCTTCGATGGCCAGCAGCGCGCCCCAAACATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCTGCATCGCGCAGAAGAACGCC  <  1:772890/150‑1                                                                                                                                                                                                                                                                                                                       GGGCGCCATCGGCGTCAGTGGCGATACCTCGGACAACGATGAGCGGTGCGCGCTGCTGGCCATCGAAGCGCTCGGGCTGATCGGCGACAGCGGCGATCTTCAGCCCTGAGCCAACGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3622414‑3622255 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggccaaggcgTTGGCTCAGGGCTGAAGATCGCCGCTGTCGCCGATCAGCCCGAGCGCTTCGATGGCCAGCAGCGCGCACCGCTCATCGTTGTCCGAGGTATCGCCACTGACGCCGATGGCGCCCAGCAGGCGACCTTCTGCATCGCGCAGAAGAACGCC  >  NC_002947/3622301‑3622449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.