| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3772190 | 58 (0.970) | 4 (0.080) | 4/212 | NT | 6.9% | intergenic (+66/‑241) | PP_3331/PP_3332 | membrane protein/cytochrome c‑type protein |
| ? | NC_002947 | = 3772202 | 57 (1.080) | intergenic (+78/‑229) | PP_3331/PP_3332 | membrane protein/cytochrome c‑type protein | |||||
CCTTGAGCATCGGCGGCCTGGTGGTTTCACTCAGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTTGAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTGATCACTGAAAAAACAAAAGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3772033‑3772190‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacaaaagccgggGCGCATTA‑CCGTCCCGGCTTTTGTTTTTTCAGTGATCAGCGGCACTCGCTCAGGCCGCTGCGAAACACGAAAGGAGGCTCAACCGCGAACTCGAGCGGTCATTCTGCGTAGCCTTCGCCAGCCTAGTACGACGCCGCTGAGTGAAAC < NC_002947/3772202‑3772056 CCTTGAGCATCGGCGGCCTGGTGGTTTCACTCAGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTTGAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTGATCACTGAAAAAACAA < 1:910247/150‑1 GAGCATCGGCGGCCTGGTGGTTTCACTCAGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTTGAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTGATCACTGAAAAAACAAAAGC < 1:1236878/150‑1 CATCGGCGGCCTGGTGGTTTCACTCAGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTTGAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTGATCACTGAAAAAACAAAAGCCGG < 2:717552/150‑1 CTGGTGGTTTCACTCAGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTTGAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTGATCACTGAAAAAACAAAAGCCGG > 1:1054031/1‑140 CTGGTGGTTTCACTCAGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTTGAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTGATCACTGAAAAAACAAAAGCCGG < 2:1054031/140‑1 CGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTTGAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTGATCACTGAAAAAACAAAAGCCGGGGCGCATTA‑CCGTCCCGGCTTTTGTTTTTTCA > 2:473064/1‑136 CGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTTGAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTGATCACTGAAAAAACAAAAGCCGGGGCGCATTA‑CCGTCCCGGCTTTTGTTTTTTCA < 1:473064/136‑1 GATCACTGAAAAAACAAAAGCCGGGACG‑GTAATGCGCCCCGGCTTTTGTTTTTTCAGTGATCAGCGGCACTCGCTCAGGCCGCTGCGAAACACGAAAGGAGGCTCAACCGCGAA > 2:745721/1‑114 GATCACTGAAAAAACAAAAGCCGGGACG‑GTAATGCGCCCCGGCTTTTGTTTTTTCAGTGATCAGCGGCACTCGCTCAGGCCGCTGCGAAACACGAAAGGAGGCTCAACCGCGAA < 1:745721/114‑1 AAACAAAAGCCGGGGCGCATTA‑CCGTCCCGGCTTTTGTTTTTTCAGTGATCAGCGGCACTCGCTCAGGCCGCTGCGAAACACGAAAGGAG > 1:1072041/1‑90 AAACAAAAGCCGGGGCGCATTA‑CCGTCCCGGCTTTTGTTTTTTCAGTGATCAGCGGCACTCGCTCAGGCCGCTGCGAAACACGAAAGGAG < 2:1072041/90‑1 ACAAAAGCCGGGGCGCATTA‑CCGTCCCGGCTTTTGTTTTTTCAGTGATCAGCGGCACTCGCTCAGGCCGCTGCGAAACACGAAAGGAGGCTCAACCGCGAACTCGAGCGGTCATTCTGCGTAGCCTTCGCCAGCCTAGTACGACGCCGCT > 2:827330/1‑150 AAAAGCCGGGGCGCATTA‑CCGTCCCGGCTTTTGTTTTTTCAGTGATCAGCGGCACTCGCTCAGGCCGCTGCGAAACACGAAAGGAGGCTCAACCGCGAACTCGAGCGGTCATTCTGCGTAGCCTTCGCCAGCCTAGTACGACGCCGCTGA < 2:307368/150‑1 AAGCCGGGGCGCATTA‑CCGTCCCGGCTTTTGTTTTTTCAGTGATCAGCGGCACTCGCTCAGGCCGCTGCGAAACACGAAAGGAGGCTCAACCGCGAACTCGAGCGGTCATTCTGCGTAGCCTTCGCCAGCCTAGTACGACGCCGCTGAGT < 2:646855/150‑1 AGCCGGGGCGCATTA‑CCGTCCCGGCTTTTGTTTTTTCAGTGATCAGCGGCACTCGCTCAGGCCGCTGCGAAACACGAAAGGAGGCTCAACCGCGAACTCGAGCGGTCATTCTGCGTA < 2:239255/117‑1 AGCCGGGGCGCATTA‑CCGTCCCGGCTTTTGTTTTTTCAGTGATCAGCGGCACTCGCTCAGGCCGCTGCGAAACACGAAAGGAGGCTCAACCGCGAACTCGAGCGGTCATTCTGCGTA > 1:239255/1‑117 AGCCGGGGCGCATTA‑CCGTCCCGGCTTTTGTTTTTTCAGTGATCAGCGGCACTCGCTCA < 2:1208803/59‑1 AGCCGGGGCGCATTA‑CCGTCCCGGCTTTTGTTTTTTCAGTGATCAGCGGCACTCGCTCA > 1:1208803/1‑59 GCCGGGGCGCATTA‑CCGTCCCGGCTTTTGTTTTTTCAGTGATCAGCGGCACTCGCTCAGGCCGCTGCGAAACACGAAAGGAGGCTCAACCGCGAACTCGAGCGGTCATTCTGCGTAGCCTTCGCCAGCCTAGTACGACGCCGCTGAGTGA > 1:933540/1‑150 CCGGGGCGCATTA‑CCGTCCCGGCTTTTGTTTTTTCAGTGATCAGCGGCACTCGCTCAGGCCGCTGCGAAACACGAAAGGAGGCTCAACCGC < 2:282473/91‑1 CCGGGGCGCATTA‑CCGTCCCGGCTTTTGTTTTTTCAGTGATCAGCGGCACTCGCTCAGGCCGCTGCGAAACACGAAAGGAGGCTCAACCGC > 1:282473/1‑91 GGGGCGCATTA‑CCGTCCCGGCTTTTGTTTTTTCAGTGATCAGCGGCACTCGCTCAGGCCGCTGCGAAACACGAAAGGAGGCTCAACCGCGAACTCGAGCGGTCATTCTGCGTAGCCTTCGCCAGCCTAGTACGACGCCGCTGAGTGAAAC < 2:933540/150‑1 CCTTGAGCATCGGCGGCCTGGTGGTTTCACTCAGCGGCGTCGTACTAGGCTGGCGAAGGCTACGCAGAATGACCGCTCGAGTTCGCGGTTGAGCCTCCTTTCGTGTTTCGCAGCGGCCTGAGCGAGTGCCGCTGATCACTGAAAAAACAAAAGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3772033‑3772190‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacaaaagccgggGCGCATTA‑CCGTCCCGGCTTTTGTTTTTTCAGTGATCAGCGGCACTCGCTCAGGCCGCTGCGAAACACGAAAGGAGGCTCAACCGCGAACTCGAGCGGTCATTCTGCGTAGCCTTCGCCAGCCTAGTACGACGCCGCTGAGTGAAAC < NC_002947/3772202‑3772056 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |