New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3799420	59 (0.990)	5 (0.090)	5/230	NT	8.1%	coding (281/471 nt)	PP_3359	hydroxycinnamic acid degradation regulator
	?	NC_002947	= 3799429	57 (0.990)					coding (290/471 nt)	PP_3359	hydroxycinnamic acid degradation regulator

CCGGCTCTCGGCCCATGACCTGCGCCCGGCCCAATTTTCCGCCCTGGCGATCATCGACCAGAACCCCGGGCTGATGCAGGCCGACCTGGCGCGTGCGTTGGCAATCGACCCCCCGCAAGTCGTGCCAATGCTGAACAAACTGGAAGAG‑‑‑‑CGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3799268‑3799420 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcAC‑GGCCAGCGCGCGCTCTTCCAGTTTGTTCAGCATTGGCACGACTTGCGGGGGGTCGATTGCCAACGCACGCGCCAGGTCGGCCTGCATCAGCCCGGGGTTCTGGTCGATGATCGCCAGGGCGGAAAATTGGGCCGGGCGCAGGTCA  <  NC_002947/3799429‑3799283                                                                                                                                                                                                                                                                                                                   CCGGCTCTCGGCCCATGACCTGCGCCCGGCCCAATTTTCCGCCCTGGCGATCATCGACCAGAACCCCGGGCTGATGCAGGCCGACCTGGCGCGTGCGTTGGCAATCGACCCCCCGCAAGTCGTGCCAATGCTGAACAAACTGGAAGAG‑‑‑‑CG                                                                                                                                                         >  1:1069192/1‑150                        GCCCGGCCCAATTTTCCGCCCTGGCGATCATCGACCAGAACCCCGGGCTGATGCAGGCCGACCTGGCGCGTGCGTTGGCAATCGACCCCCCGCAAGTCGTGCCAATGCTGAACAAACTGGAAGAGCGCACGCGCAC‑GGCCAGCGCGCGCT                                                                                                                                     <  1:1234058/150‑1                                                                                                                             CCAATGCTGAACAAACTGGAAGAG‑‑‑‑CGCGCGCTGGCC‑GTGCGCGCTCTTCCAGTTTGTTCAGCATTGGCACGACTTGCGGGGGGTCGATTGCCAACGCACGCGCCAGGTCGGCCTGCATCAGCCCGGGGTTCTGGTCGATGATCGCCAG                              >  2:899664/1‑148                                                                                                                             CCAATGCTGAACAAACTGGAAGAG‑‑‑‑CGCGCGC‑TGGCCGTGCGCGCTCTTCCAGTTTGTTCAGCATTGGCACGACTTGCGGGGGGTCGATTGCCAACGCACGCGCCAGGTCGGCCTGCATCAGCCCGGGGTTCTGGTCGATGATCGCCAG                              <  1:899664/148‑1                                                                                                                                      AACAAACTGGAAGAG‑‑‑‑CGCGCGC‑TGGCCGTGCGCGCTCTTCCAGTTTGTTCAGCATTGGCACGACTTGCGGGGGGTCGATTGCCAACGCA                                                                                <  1:885419/89‑1                                                                                                                                      AACAAACTGGAAGAG‑‑‑‑CGCGCGC‑TGGCCGTGCGCGCTCTTCCAGTTTGTTCAGCATTGGCACGACTTGCGGGGGGTCGATTGCCAACGCA                                                                                >  2:885419/1‑89                                                                                                                                                           CGCAC‑GGCCAGCGCGCGCTCTTCCAGTTTGTTCAGCATTGGCACGACTTGCGGGGGGTCGATTGCCAACGCACGCGCCAGGTCGGCCTGCATCAGCCCGGGGTTCTGGTCGATGATCGCCAGGGCGGAAAATTGGGCCGGGCGCAGGTCA  <  1:479920/150‑1                                                                                                                                                                                                                                                                                                                   CCGGCTCTCGGCCCATGACCTGCGCCCGGCCCAATTTTCCGCCCTGGCGATCATCGACCAGAACCCCGGGCTGATGCAGGCCGACCTGGCGCGTGCGTTGGCAATCGACCCCCCGCAAGTCGTGCCAATGCTGAACAAACTGGAAGAG‑‑‑‑CGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3799268‑3799420 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcAC‑GGCCAGCGCGCGCTCTTCCAGTTTGTTCAGCATTGGCACGACTTGCGGGGGGTCGATTGCCAACGCACGCGCCAGGTCGGCCTGCATCAGCCCGGGGTTCTGGTCGATGATCGCCAGGGCGGAAAATTGGGCCGGGCGCAGGTCA  <  NC_002947/3799429‑3799283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.