| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4110078 = | 51 (0.850) | 4 (0.070) | 4/226 | NT | 7.6% | coding (1856/2991 nt) | PP_3616 | membrane protein |
| ? | NC_002947 | 4110097 = | 49 (0.870) | coding (1875/2991 nt) | PP_3616 | membrane protein | |||||
CGAACACAGATGAAGCGAACCCCAGGGTGTATTCCGGTGCATCGCTCTTCTGCAGGCTGTTGTAGGCCGTCTTGAGCGATAAGATGTTGAACCACAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAAGGAAGTTGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4110233‑4110078‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgggttACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTGTTCGGGGTGATCG > NC_002947/4110097‑4110242 CGAACACAGATGAAGCGAACCCCAGGGTGTATTCCGGTGCATCGCTCTTCTGCAGGCTGTTGTAGGCCGTCTTGAGCGATAAGATGTTGAACCACAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAAGGAAGT < 2:487406/150‑1 AACACAGATGAAGCGAACCCCAGGGTGTATTCCGGTGCATCGCTCTTCTGCAGGCTGTTGTAGGCCGTCTTGAGCGATAAGATGTTGAACCACAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAAGGAAGTTG < 1:1450306/150‑1 GCAGGCTGTTGTAGGCCGTCTTGAGCGATAAGATGTTGAACCACAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTG < 1:1455195/122‑1 GCAGGCTGTTGTAGGCCGTCTTGAGCGATAAGATGTTGAACCACAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGTG > 2:1455195/1‑122 TCTTGAGCGATAAGATGTTGAACCACAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGT < 1:1609045/103‑1 TCTTGAGCGATAAGATGTTGAACCACAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAACTTCCTTGGGTTACTCACCTCCGGCGGT > 2:1609045/1‑103 GATAAGATGTTGAACCACAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAAGGAAGTTGG < 1:891902/76‑1 GATAAGATGTTGAACCACAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAAGGAAGTTGG > 2:891902/1‑76 CAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAAGGAAGTTGGGT > 1:272975/1‑61 CAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAAGGAAGTTGGGT < 2:272975/61‑1 GGTTACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTGTTCGGGGTGATCG > 1:435838/1‑150 CGAACACAGATGAAGCGAACCCCAGGGTGTATTCCGGTGCATCGCTCTTCTGCAGGCTGTTGTAGGCCGTCTTGAGCGATAAGATGTTGAACCACAGCATCCCCGCGTTTAAACCACCACCACCGCCGGAGGTGAGTAACCCAAGGAAGTTGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4110233‑4110078‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgggttACTCACCTCCGGCGGTGGTGGTGGTTTAAACGCGGGGATGCTGTGGTTCAACATCTTATCGCTCAAGACGGCCTACAACAGCCTGCAGAAGAGCGATGCACCGGAATACACCCTGGGGTTCGCTTCATCTGTGTTCGGGGTGATCG > NC_002947/4110097‑4110242 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |