New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 415196057 (0.950)6 (0.100) 7/230 NT 9.5% intergenic (+106/+45) PP_3655/PP_3656 cytosine/purine/uracil/thiamine/allantoin permease family protein/aromatic compound‑specific porin
?NC_002947 = 4152002 60 (1.050)intergenic (+148/+3) PP_3655/PP_3656 cytosine/purine/uracil/thiamine/allantoin permease family protein/aromatic compound‑specific porin

ACCGTCGTCGGCAGACCAGCGCCAAGCTGGCAGCGATGGCTTAATCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4151811‑4151960
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaatAGCG‑‑AAACGGGCCGGCCTTCTGAA‑GCCGGCCCATTTTTCGCCATTTATTCCCAATCGAAGGGTTCGCTGTTTTCCGCCTGAATTGCACCAGGCGTTCGGACGCCTGCACCCAGCCGTTTCATCTTTTGCAACGAAAGGCCAGTACCGAT  <  NC_002947/4152002‑4151854
                                                                                                                                                                                                                                                                                                              
ACCGTCGTCGGCAGACCAGCGCCAAGCTGGCAGCGATGGCTTAATCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAAT                                                                                                                                                          >  1:194844/1‑150
                      CAAGCTGGCAGCGATGGCTTAATCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAAT                                                                                                                                                          <  1:1009389/128‑1
                      CAAGCTGGCAGCGATGGCTTAATCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAAT                                                                                                                                                          >  2:1009389/1‑128
                                                            GTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATAGCG‑‑AAACGGGCCGGCCTTCTGAA‑GCCGGCCCATTTTTCGCCATTTATTC                                                                                                     >  1:118833/1‑140
                                                            GTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATAGCG‑‑AAACGGGCCGGCCTTCTGAA‑GCCGGCCCATTTTTCGCCATTTATTC                                                                                                     <  2:118833/140‑1
                                                                        GAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGGCGCAAAACGGGCCGGCCTTCTGAA‑GCCGGCCCAT                                                                                                                     >  1:529384/1‑114
                                                                        GAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGGCGAAAAACGGGCCGGCCTTCTGAA‑GCCGGCCCAT                                                                                                                     <  2:529384/114‑1
                                                                                                                 AGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATAGCG‑‑AAACGGGCCGGCCTTCTGAA‑GCCGGCCCATTTTTCGCCA                                                                                                            <  1:560539/80‑1
                                                                                                                 AGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATAGCG‑‑AAACGGGCCGGCCTTCTGAA‑GCCGGCCCATTTTTCGCCA                                                                                                            >  2:560539/1‑80
                                                                                                                                             GGAATAAATGGCGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTTTCGCCATTTATTCCCAATCGAAGGGTTCGCTGTTTTCCGCCTGAATTGCACCAGGCGTTCGGACGCCTGCACCCAGCCGTTTCATCTTTTGCAACGAAAGGC            >  1:482516/1‑150
                                                                                                                                                    ATAGCG‑‑AAACGGGCCGGCCTTCTGAA‑GCCGGCCCATTTTTCGCCATTTATTCCCAATCGAAGGGTTCGCTGTTTTCCGCCTGAATTGCACCAGGCGTTCGGACGCCTGCACCCAGCCGTTTCATCTTTTGCAACGAAAGGCCAGTACCGA   <  1:1098833/150‑1
                                                                                                                                                     TAGCG‑‑AAACGGACCGGCCTTCTGAA‑GCCGGCCCATTTTTCGCCATTTATTCCCAATCGAAGGGTTCGCTGTTTTCCGCCTGAATTGCACCAGGCGTTCGGACGCCTGCACCCAGCCGTTTCATCTTTTGCAACGAAAGGCCAGTACCGAT  >  1:962163/1‑150
                                                                                                                                                                                                                                                                                                              
ACCGTCGTCGGCAGACCAGCGCCAAGCTGGCAGCGATGGCTTAATCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4151811‑4151960
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaatAGCG‑‑AAACGGGCCGGCCTTCTGAA‑GCCGGCCCATTTTTCGCCATTTATTCCCAATCGAAGGGTTCGCTGTTTTCCGCCTGAATTGCACCAGGCGTTCGGACGCCTGCACCCAGCCGTTTCATCTTTTGCAACGAAAGGCCAGTACCGAT  <  NC_002947/4152002‑4151854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.