New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4191330 =	61 (1.020)	4 (0.070)	4/230	NT	6.4%	intergenic (‑618/‑539)	PP_5612/PP_5613	hypothetical protein/hypothetical protein
	?	NC_002947	4191356 =	59 (1.030)					intergenic (‑644/‑513)	PP_5612/PP_5613	hypothetical protein/hypothetical protein

GGATGCCCTCCTTGTGTGATGAATCAACCTGATCGGCTTGCTTCATCAGGCTCTGTCGTCTCCGGCGAACTACCAAGCTTCGACGCAAGCGGAGCGCGCAGGCGAGAGGATGGTCGCCCGAAGGGCCGAGACCTGCCCCAGGCGGGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4191480‑4191330 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcggCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCTGATGAAGCAAGCCGATCAGGTTGATTCATCACACAAGGAGGGCATCCGCCCCCCCTTGGGTCGACCTGCCA  >  NC_002947/4191356‑4191504                                                                                                                                                                                                                                                                                                              GGATGCCCTCCTTGTGTGATGAATCAACCTGATCGGCTTGCTTCATCAGGCTCTGTCGTCTCCGGCGAACTACCAAGCTTCGACGCAAGCGGAGCGCGCAGGCGAGAGGATGGTCGCCCGAAGGGCCGAGACCTGCCCCAGGCGGGCTCG                                                                                                                                                        <  2:709114/150‑1                                                                                                                       CGAAGGGCCGAGACCTGCCCCAGGCGGGCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGT                                                                                                            >  1:498330/1‑76                                                                                                                       CGAAGGGCCGAGACCTGCCCCAGGCGGGCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGT                                                                                                            <  2:498330/76‑1                                                                                                                                GAGACCTGCCCCAGGCGGGCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTC                                                                                            >  1:1255250/1‑83                                                                                                                                GAGACCTGCCCCAGGCGGGCTCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTC                                                                                            <  2:1255250/83‑1                                                                                                                                                    TCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCTGA                                                                       <  1:535945/84‑1                                                                                                                                                    TCGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCTGA                                                                       >  2:535945/1‑84                                                                                                                                                     CGGCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCTGATGAAGCAAGCCGATCAGGTTGATTCATCACACAAGGAGGGCATCCGCCCCCCCTTGGGTCGACCTGC    <  2:1115257/150‑1                                                                                                                                                     CGGCCCTTCCGGCGTCCATCCTCTCGCCGACGCTCTCCGCTTTCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCTGATGAAGCAAGCCGATCAGGTTGATTCATCACACAAGGAGGGCATCCTCCCCCCCTTGGGTCGACCTGC    <  2:650591/150‑1                                                                                                                                                       GCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCTGATGAAGCAAGCCGATCAGGTTGATTCATCACACAAGGAGGGCATCCGCCCCCCCTTGGGTCGACCTGCCA  >  2:1613580/1‑150                                                                                                                                                                                                                                                                                                              GGATGCCCTCCTTGTGTGATGAATCAACCTGATCGGCTTGCTTCATCAGGCTCTGTCGTCTCCGGCGAACTACCAAGCTTCGACGCAAGCGGAGCGCGCAGGCGAGAGGATGGTCGCCCGAAGGGCCGAGACCTGCCCCAGGCGGGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4191480‑4191330 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcggCCCTTCGGGCGACCATCCTCTCGCCTGCGCGCTCCGCTTGCGTCGAAGCTTGGTAGTTCGCCGGAGACGACAGAGCCTGATGAAGCAAGCCGATCAGGTTGATTCATCACACAAGGAGGGCATCCGCCCCCCCTTGGGTCGACCTGCCA  >  NC_002947/4191356‑4191504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.