| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4238888 = | 55 (0.920) | 4 (0.070) | 4/226 | NT | 7.4% | coding (460/873 nt) | catR | HTH‑type transcriptional regulator |
| ? | NC_002947 | 4238921 = | 49 (0.870) | coding (493/873 nt) | catR | HTH‑type transcriptional regulator | |||||
GCCAGCACGTGGTCGGCATAGCTGGGCCGGGGATTGGCCGGGTAGAGGATGAACGCTTCGCCAGCCAACTGGGCCAGACTGAGCGGGCTGCCCGCCAGGGGGTGGCCCTTGGGCAGCACGGCCACCAGCGGGTCCTCGCACAGCACCTGCTGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4239042‑4238888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggtgGCCGTGCTGCCCAAGGGCCACCCCCTGGCGGGCAGCCCGCTCAGTCTGGCCCAGTTGGCTGGCGAAGCGTTCATCCTCTACCCGGCCAATCCCCGGCCCAGCTATGCCGACCACGTGCTGGCGCTGTTCGCCCACCACGGCATGAGC > NC_002947/4238921‑4239067 GCCAGCACGTGGTCGGCATAGCTGGGCCGGGGATTGGCCGGGTAGAGGATGAACGCTTCGCCAGCCAACTGGGCCAGACTGAGCGGGCTGCCCGCCAGGGGGTGGCCCTTGGGCAGCACGGCCACCAGCGGGTCCTCGCACAGCACCTGC > 2:885680/1‑150 CAGCACGTGGTCGGCATAGCTGGGCCGGGGATTGGCCGGGTAGAGGATGAACGCTTCGCCAGCCAACTGGGCCAGACTGAGCGGGCTGCCCGCCAGGGGGTGGCCCTTGGGCAGCACGGCCACCAGCGGGTCCTCGCACAGCACCTGCTG < 1:265859/150‑1 CAGCACGTGGTCGGCATAGCTGGGCCGGGGATTGGCCGGGTAGAGGATGAACGCTTCGCCAGCCAACTGGGCCAGACTGAGCGGGCTGCCCGCCAGGGGGTGGCCCTTGGGCAGCACGGCCACCAGCGGGTCCTCGCACAGCACCTGCTG > 2:1608217/1‑150 CACGTGGTCGGCATAGCTGGGCCGGGGATTGGCCGGGTAGAGGATGAACGCTTCGCCAGCCAACTGGGCCAGACTGAGCGGGCTGCCCGCCAGGGGGTGGCCCTTGGGCAGCACGGCCACCAGCGGGTCCTCGCACAGCACCTGCTGGTG < 2:1117541/150‑1 GATGAACGCTTCGCCAGCCAACTGGGCCAGACTGAGCGGGCTGCCCGCCAGGGGGTGGCCCTTGGGCAGCACGGCCACCAGCGGGTCCTCGCACAGCACCTGCTGGT < 1:290299/107‑1 GATGAACGCTTCGCCAGCCAACTGGGCCAGACTGAGCGGGCTGCCCGCCAGGGGGTGGCCCTTGGGCAGCACGGCCACCAGCGGGTCCTCGCACAGCACCTGCTGGT > 2:290299/1‑107 CAGCGGGTCCTCGCACAGCACCTGCTGGTGGCCGTGCTGCCCAAGGGCCACCCCCTGGCGGGCAGCCCGCTCAGTCTGGCCCAGTTGG < 1:735917/88‑1 CAGCGGGTCCTCGCACAGCACCTGCTGGTGGCCGTGCTGCCCAAGGGCCACCCCCTGGCGGGCAGCCCGCTCAGTCTGGCCCAGTTGG > 2:735917/1‑88 AGCGGGTCCTCGCACAGCACCTGCTGGTGGCCGTGCTGCCCAAGGGCCACCCCCTGGCGGGCAGCCCGCTCAGTCTGG > 1:1387795/1‑78 AGCGGGTCCTCGCACAGCACCTGCTGGTGGCCGTGCTGCCCAAGGGCCACCCCCTGGCGGGCAGCCCGCTCAGTCTGG < 2:1387795/78‑1 TGGTGGCCGTGCTGCCCAAGGGCCACCCCCTGGCGGGCAGCCCGCTCAGTCTGGCCCAGTTGGCTGGCGAAGCGTTCATCCTCTACCCGGCCAATCCCCGGCCCAGCTATGCCGACCACGTGCTGGCGCTGTTCGCCCACCACGGCATGA > 1:775144/1‑150 TGGTGGCCGTGCTGCCCAAGGGCCACCCCCTGGCGGGCAGCCCGCTCAGTCTGGCCCAGTTGGCTGGCGAAGCGTTCATCCTCTACCCGGCCAATCCCCGGCCCAGCTATGCCGACCACGTGCTGGCGCTGTTCGCCCACCACGGCATGA < 2:1531533/150‑1 GTGGCCGTGCTGCCCAAGGGCCACCCCCTGGCGGGCAGCCCGCTCAGTCTGGCCCAGTTGGCTGGCGAAGCGTTCATCCTCTACCCGGCCAATACCCGGCCCAGCTATGCCGACCACGTGCTGGCGCTGTTCGCCCACCACGGCATGAGC > 1:1150483/1‑150 GCCAGCACGTGGTCGGCATAGCTGGGCCGGGGATTGGCCGGGTAGAGGATGAACGCTTCGCCAGCCAACTGGGCCAGACTGAGCGGGCTGCCCGCCAGGGGGTGGCCCTTGGGCAGCACGGCCACCAGCGGGTCCTCGCACAGCACCTGCTGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4239042‑4238888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggtgGCCGTGCTGCCCAAGGGCCACCCCCTGGCGGGCAGCCCGCTCAGTCTGGCCCAGTTGGCTGGCGAAGCGTTCATCCTCTACCCGGCCAATCCCCGGCCCAGCTATGCCGACCACGTGCTGGCGCTGTTCGCCCACCACGGCATGAGC > NC_002947/4238921‑4239067 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |