New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4257932 =	62 (1.040)	4 (0.070)	4/236	NT	6.3%	coding (450/645 nt)	PP_3731	TetR family transcriptional regulator
	?	NC_002947	4257962 =	59 (1.000)					coding (420/645 nt)	PP_3731	TetR family transcriptional regulator

CTGCGCCGAGCTGCTCGACCCGCAATTGCTCGATGCCTGGCTGGCTTTCTGGGGGGCGGTGAAGACCGCCGACGCGATCAACCAGGTGCACGACCACTCCTACGGCGAGTACCGCAACGAACTTGGCCAGCTACTGGCCAG‑‑GCTGGCCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4258082‑4257932 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agTTCGTTGCGGTACTCGCCGTAGGAGTGGTCGTGC  >  NC_002947/4257962‑4257995                                                                                                                                                                                             CTGCGCCGAGCTGCTCGACCCGCAATTGCTCGATGCCTGGCTGGCTTTCTGGGGGGCGGTGAAGACCGCCGACGCGATCAACCAGGTGCACGACCACTCCTACGGCGAGTACCGCAACGAACTTGGCCAGCTACTGGCCAG‑‑GCTGGCCGA                                     <  2:848059/150‑1                                       GGCTGGCTTTCTGGGGGGCGGTGAAGACCGCCGACGCGATCAACCAGGTGCACGACCACTCCTACGGCGAGTACCGCAACGAACTCGGCCAGC‑‑CTGGCCAGTAGCTGGCCAAGTTCGTTGCGGTACTCGCCGTA               >  1:1500505/1‑134                                       GGCTGGCTTTCTGGGGGGCGGTGAAGACCGCCGACGCGATCAACCAGGTGCACGACCACTCCTACGGCGAGTACCGCAACGAACTCGGCCAGC‑‑CTGGCCAGTAGCTGGCCAAGTTCGTTGCGGTACTCGCCGTA               <  2:1500505/134‑1                                                                                                                           TTGGCCAGCTACTGGCCAG‑‑GCTGGCCGAGTTCGTTGCGGTACTCGCCGTAGGAGTGGTCGTGC  <  1:1083813/63‑1                                                                                                                           TTGGCCAGCTACTGGCCAG‑‑GCTGGCCGAGTTCGTTGCGGTACTCGCCGTAGGAGTGGTCGTGC  >  2:1083813/1‑63                                                                                                                                                                                             CTGCGCCGAGCTGCTCGACCCGCAATTGCTCGATGCCTGGCTGGCTTTCTGGGGGGCGGTGAAGACCGCCGACGCGATCAACCAGGTGCACGACCACTCCTACGGCGAGTACCGCAACGAACTTGGCCAGCTACTGGCCAG‑‑GCTGGCCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4258082‑4257932 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agTTCGTTGCGGTACTCGCCGTAGGAGTGGTCGTGC  >  NC_002947/4257962‑4257995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.