New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4273079	63 (1.050)	4 (0.070)	4/232	NT	6.2%	intergenic (+11/+50)	PP_3743/glcC	hypothetical protein/transcriptional regulator GlcC
	?	NC_002947	= 4273116	61 (1.050)					intergenic (+48/+13)	PP_3743/glcC	hypothetical protein/transcriptional regulator GlcC

CGCCAGCGGCGGTACCATCCGCGGCGCCTATGTGGAGTCGGCGCTTGAACAGGCCCGCAAGGACCATCCTGGGCTGCAGGCCAACGACGAAGAGCTGGCCCGGGCCATCCTGTCGCAAGATGACCCTGTGGCTGACCATTGAGTAAACCTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4272927‑4273079 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaTCGGCCCTCTCGCGTCGAACCGCCGCGAAAGGGCCGGTACAGGTTTACTCAATGGTCAGCCACAGGGTCATCTTGCGACAGGATGGCCCGGGCCAGCTCTTCGTCGTTGGCCTGCAGCCCAGGATGGTCCTTGCGGGCCTGTTCAAGC  <  NC_002947/4273116‑4272969                                                                                                                                                                                                                                                                                                               CGCCAACGGCGATACCATCCGCGTCGCCTATGTGGAGTCGGCGCTTGAACAGGCCCGCAAGGACCATCCTGGGCTGCAGGCCAACGACGAAGAGCTGGCCCGGGCCATCCTGTCGCAAGATGACCCTGTGGCTGACCATTGAGTAAACCT                                                                                                                                                         <  2:911452/150‑1   CCAGCGGCGGTACCATCCGCGGCGCCTATGTGGAGTCGGCGCTTGAACAGGCCAGGCACGACGATCCTGGCCCGCTTGTCAACGACGAAGAGCTGGCCCGGGCCATCCTGTCGCAAGATGACCCTGTGGCTGACCATTGAGTAAACCTGT                                                                                                                                                       >  1:1019417/1‑150                                                                                         GAAGAGCTGGCCCGGGCCATCCTGTCGCAAGATGACCCTGTGGCTGACCATTGAGTAAACCTGTATCGGCCCTCTCGCGTCGAACCGCCGCGAAAGGGCCGGTA                                                                                                               <  1:970852/104‑1                                                                                         GAAGAGCTGGCCCGGGCCATCCTGTCGCAAGATGACCCTGTGGCTGACCATTGAGTAAACCTGTATCGGCCCTCTCGCGTCGAACCGCCGCGAAAGGGCCGGTA                                                                                                               >  2:970852/1‑104                                                                                                                             CCTGTGGCTGACCATTGAGTAAACCTGTATCGGCCCTCTCGCGTCGAACCGCCGCGAAAGGGCCGGTACAGGTTTACTCAATGGTCAGCCACAGGGTCATCTTGCGACAGGATGGCCCGGGCCA                                                       <  1:1553895/124‑1                                                                                                                             CCTGTGGCTGACCATTGAGTAAACCTGTATCGGCCCTCTCGCGTCGAACCGCCGCGAAAGGGCCGGTACAGGTTTACTCAATGGTCAGCCACAGGGTCATCTTGCGACAGGATGGCCCGGGCCA                                                       >  2:1553895/1‑124                                                                                                                                                        TATCGGCCCTCTCGCGTCGAACCGCCGCGAAAGGGCCGGTACAGGTTTACTCAATGGTCAGCCACAGGGTCATCTTGCGACAGGATGGCCCGGGCCAGCTCTTCGTCGTTGGCCTGCAGCCCAGGATGGTCCTTGCGGGCCTGTTCAAGC  <  1:253012/150‑1                                                                                                                                                                                                                                                                                                               CGCCAGCGGCGGTACCATCCGCGGCGCCTATGTGGAGTCGGCGCTTGAACAGGCCCGCAAGGACCATCCTGGGCTGCAGGCCAACGACGAAGAGCTGGCCCGGGCCATCCTGTCGCAAGATGACCCTGTGGCTGACCATTGAGTAAACCTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4272927‑4273079 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaTCGGCCCTCTCGCGTCGAACCGCCGCGAAAGGGCCGGTACAGGTTTACTCAATGGTCAGCCACAGGGTCATCTTGCGACAGGATGGCCCGGGCCAGCTCTTCGTCGTTGGCCTGCAGCCCAGGATGGTCCTTGCGGGCCTGTTCAAGC  <  NC_002947/4273116‑4272969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.