New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4408709 =	61 (1.020)	5 (0.080)	5/236	NT	7.6%	coding (64/297 nt)	ybcO	hypothetical protein
	?	NC_002947	4408741 =	61 (1.040)					coding (32/297 nt)	ybcO	hypothetical protein

CCGCAACAAAGATTTCGCCATCGCTCACGGCCAGCGCCTGTGGCCGAGCACCTTCTGCGTTATTGACCTTCATGGAGAAGACAACCCATGCGGCAATCGAAACTGACCAAAGCCGCCCGCGGCCGGGAGTGCCAGGTGCGCATCCCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4408859‑4408709 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgCGGGCGGCTTTGGTCAGTTTCGATTGCCGCATGGGTTGTCTTCTCCATGAAGGTCAATAACGCAGAAGGTGCTCGGCCACAGGCGCTGGCCGTGAGCGATGGCGAAATCTTTGTTGCGGTAGAGCGCAATGGGCGGCTCTGGGTTGGTG  >  NC_002947/4408741‑4408889                                                                                                                                                                                                                                                                                                              CCGCAACAAAGATTTCGCCATCGCTCACGGCCAGCGCCTGTGGCCGAGCACCTTCTGCGTTATTGACCTTCATGGAGAAGACAACCCATGCGGCAATCGAAACTGACCAAAGCCGCCCGCGGCCGGGAGTGCCAGGTGCGCATCCCGGGC                                                                                                                                                        >  1:868424/1‑150                                                                                                        TGACCAAAGCCGCCCGCGGCCGGGAGTGCCAGGTGCGCATCCCGGGCGCGGGCGGCTTTGGTCAGTTTCGATTGCCGCATGGGTTGTCTTCTCCATGAAGGTC                                                                                                <  1:995019/103‑1                                                                                                        TGACCAAAGCCGCCCGCGGCCGGGAGTGCCAGGTGCGCATCCCGGGCGCGGGCGGCTTTGGTCAGTTTCGATTGCCGCATGGGTTGTCTTCTCCATGAAGGTC                                                                                                >  2:995019/1‑103                                                                                                                     CCGCGGCCGGGAGTGCCAGGTGCGCATCCCGGGCGCGGGCGGCTTTGGTCAGTTTCGATTGCCGCATGGGTTGTCTTCTCCATGAAG                                                                                                   >  1:962485/1‑87                                                                                                                     CCGCGGCCGGGAGTGCCAGGTGCGCATCCCGGGCGCGGGCGGCTTTGGTCAGTTTCGATTGCCGCATGGGTTGTCTTCTCCATGAAG                                                                                                   <  2:962485/87‑1                                                                                                                         GGCCGGGAGTGCCAGGTGCGCATCCCGGGCGCGGGCGGCTTTGGTCAGTTTCGATTGCCGCATGGGTTGTCTTCTCCATGAAGGTCAATAACGCAGAAGGTGCTCGGCCACAGGCGCTGGCCGTGAGCGATGGCGAAATCTTTGTTGCGG                                >  1:1547305/1‑150                                                                                                                                                      CGCGGGCGGCTTTGGTCAGTTTCGATTGCCGCATGGGTTGTCTTCTCCATGAAGGTCAATAACGCAGAAGGTGCTCGGCCACAGGCGCTGGCCGTGAGCGATGGCGAAATCTTTGTTGCGGTAGAGCGCAATGGGCGGCTCTGGGTTGGT   <  1:82429/150‑1                                                                                                                                                       GCGGGCGGCTTTGGTCAGTTTCGATTGCCGCATGGGTTGTCTTCTCCATGAAGGTCAATAACGCAGAAGGTGCTCGGCCACAGGCGCTGGCCGTGAGCGATGGCGAAATCTTTGTTGCGGTAGAGCGCAATGGGCGGCTCTGGGTTGGTG  <  2:300608/150‑1                                                                                                                                                                                                                                                                                                              CCGCAACAAAGATTTCGCCATCGCTCACGGCCAGCGCCTGTGGCCGAGCACCTTCTGCGTTATTGACCTTCATGGAGAAGACAACCCATGCGGCAATCGAAACTGACCAAAGCCGCCCGCGGCCGGGAGTGCCAGGTGCGCATCCCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4408859‑4408709 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgCGGGCGGCTTTGGTCAGTTTCGATTGCCGCATGGGTTGTCTTCTCCATGAAGGTCAATAACGCAGAAGGTGCTCGGCCACAGGCGCTGGCCGTGAGCGATGGCGAAATCTTTGTTGCGGTAGAGCGCAATGGGCGGCTCTGGGTTGGTG  >  NC_002947/4408741‑4408889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.