New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5169030 =	79 (1.320)	5 (0.090)	5/230	NT	6.3%	coding (600/1365 nt)	PP_4547	glutamine synthetase
	?	NC_002947	5169066 =	72 (1.250)					coding (636/1365 nt)	PP_4547	glutamine synthetase

ATGAAGCAGGCCTGCATGCCGTGGGCATGGGCCACACCTTTTACCAAGCGCTTGTAGCGCACCGCCTGGTCCATCGCCTGCAGCGCATCGCCATGCTCCAGGGTGATTTCCACCTGGCCCGGGGCGTACTCGGAAATGGCCGTGCGCGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5169182‑5169030 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggCCAGGTGGAAATCACCCTGGAGCATGGCGATGCGCTGCAGGCGATGGACCAGGCGGTGCGCTACAAGCGCTTGGTAAAAGGTGTGGCCCATGCCCACGGCATGCAGGCCTGCTTC  >  NC_002947/5169066‑5169180                                                                                                                                                                                                                                                                              ATGAAGCAGGCCTGCATGCCGTGGGCATGGGCCACACCTTTTACCAAGCGCTTGTAGCGCACCGCCTGGTCCCTCGCCTGCAGCGCATCGCCATGCTCCAGGGTGATTTCCACCTGGCCCGGGGCGTACTCGGAAATGGCCGTGCGCGCC                                                                                                                        >  1:153079/1‑150   GAAGCAGGCCTGCATGCCGTGGGCATGGGCCACACCTTTTACCAAGCGCTTGTAGCGCACCGCCTGGTCCATCGCCTGCAGCGCATCGCCATGCTCCAGGGTGATTTCCACCTGGCCCGGGGCGTACTCGGAAATGGCCGTGCGCGCCGG                                                                                                                      <  1:504252/150‑1   GAAGCAGGCCTGCATGCCGTGGGCATGGGCCACACCTTTTACCAAGCGCTTGTAGCGCACCGCCTGGTCCATCGCCTGCAGCGCATCGCCATGCTCCAGGGTGATTTCCACCTGGCCCGGGGCGTACTCGGAAATGGCCGTGCGCGCCGG                                                                                                                      <  1:814807/150‑1                        GGCATGGGCCACACCTTTTACCAAGCGCTTGTAGCGCACCGCCTGGTCCATCGCCTGCAGCGCATCGCCATGCTCCAGGGTGATTTCCACCTGGCCCGGGGCGTACTCGGAAATGGCCGTGCGCGCCG                                                                                                                       >  1:322437/1‑128                        GGCATGGGCCACACCTTTTACCAAGCGCTTGTAGCGCACCGCCTGGTCCATCGCCTGCAGCGCATCGCCATGCTCCAGGGTGATTTCCACCTGGCCCGGGGCGTACTCGGAAATGGCCGTGCGCGCCG                                                                                                                       <  2:322437/128‑1                                                                                                           TTTCCACCTGGCCCGGGGCGTACTCGGAAATGGCCGTGCGCGCCGGGCCAGGTGGAAATCACCCTGGAGCATGGCGATGCGCTGCAGGCGATGGACCAGGCGGTGCGCTACAAGCGCTT                                             <  1:175046/119‑1                                                                                                           TTTCCACCTGGCCCGGGGCGTACTCGGAAATGGCCGTGCGCGCCGGGCCAGGTGGAAATCACCCTGGAGCATGGCGATGCGCTGCAGGCGATGGACCAGGCGGTGCGCTACAAGCGCTT                                             >  2:175046/1‑119                                                                                                                     GCCCGGGGCGTACTCGGAAATGGCCGTGCGCGCCGGGCCAGGTGGAAATCACCCTGGAGCATGGCGATGCGCTGCAGGCGATGGACCAGGCGGTGCGCTACAAGCGCTTGGTAAAAGGTGTGGCCCATGCCCACGGCATGCAGGCCTGC     <  1:188164/149‑1                                                                                                                     GCCCGGGGCGTACTCGGAAATGGCCGTGCGCGCCGGGCCAGGTGGAAATCACCCTGGAGCATGGCGATGCGCTGCAGGCGATGGACCAGGCGGTGCGCTACAAGCGCTTGGTAAAAGGTGTGGCCCATGCCCACGGCATGCAGGCCTGC     >  2:188164/1‑149                                                                                                                       CCGGGGCGTACTCGGAAATGGCCGTGCGCGCCGGGCCAGGTGGAAATCACGCTGGAGCATGGCGATGCGCTGCAGGCGATGGACCAGGCGGTGCGCTACAAGCGCTTGGTAAAAGGTGTGGCCCATGCCCACGGCATGCAGGCCTGCTTC  >  2:957146/1‑150                                                                                                                                                        GGCCAGGTGGAAATCACCCTGGAGGATGGCGATGCGCTGCAGGCGATGGACCAGGCGGTGCGCTACAAG                                                  <  1:1519858/69‑1                                                                                                                                                        GGCCAGGTGGAAATCACCCTGGAGCATGGCGATGCGCTGCAGGCGATGGACCAGGCGGTGCGCTACAAG                                                  >  2:1519858/1‑69                                                                                                                                                                                                                                                                              ATGAAGCAGGCCTGCATGCCGTGGGCATGGGCCACACCTTTTACCAAGCGCTTGTAGCGCACCGCCTGGTCCATCGCCTGCAGCGCATCGCCATGCTCCAGGGTGATTTCCACCTGGCCCGGGGCGTACTCGGAAATGGCCGTGCGCGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5169182‑5169030 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggCCAGGTGGAAATCACCCTGGAGCATGGCGATGCGCTGCAGGCGATGGACCAGGCGGTGCGCTACAAGCGCTTGGTAAAAGGTGTGGCCCATGCCCACGGCATGCAGGCCTGCTTC  >  NC_002947/5169066‑5169180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.