New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 523757165 (1.090)4 (0.070) 4/222 NT 6.4% intergenic (+6/‑18) PP_5700/PP_4614 hypothetical protein/hypothetical protein
?NC_002947 = 5237610 56 (1.010)coding (22/387 nt) PP_4614 hypothetical protein

GCCACCAACCGATTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5237414‑5237571
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatcggcaCAAACGAAAACGCCCGGCTCAAGGCCGGGCGTTTTGCATTGCCGATCAGGCGTCCGGGTCACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCAGCTTGCCGTAGAAGTGCTCCAGCGCGTGATTGAGCTTGGTGGCGGCACCGTCGACTG  <  NC_002947/5237610‑5237462
                                                                                                                                                                                                                                                                                                                   
GCCACCAACCGATTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCT                                                                                                                                                               >  2:1012527/1‑150
   ACCAACCGATTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGAT                                                                                                                                                            <  1:1321296/150‑1
   ACCAACCGATTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGAT                                                                                                                                                            >  1:1462812/1‑150
   ACCAACCGATTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGAT                                                                                                                                                            <  1:733982/150‑1
   ACCAACCGATTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGAT                                                                                                                                                            >  2:402645/1‑150
     CAACCGATTTCCTTGACCCACACCGCCAGTTCGCTGGACCAGGCATTTTATGTTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCG                                                                                                                                                          >  2:230664/1‑150
      AACCGATTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGG                                                                                                                                                         <  1:597398/150‑1
      AACCGATTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGG                                                                                                                                                         >  2:340137/1‑150
       ACCGATTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGC                                                                                                                                                        >  2:922680/1‑150
                      CCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCACAAACGAAAACGCC                                                                                                                                         >  1:983306/1‑150
                                                       CGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCACAAACGAAAACGCCCGGCTCAAGGCCGGGCGTTTTGCATTGCCGATC                                                                                                        <  2:983306/150‑1
                                                                          AATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCACAAACGAAAACGCCCGGCTCAAGGCCGGGCGTTTTGCATTGCCGATCAGG                                                                                                     >  1:1581063/1‑134
                                                                          AATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCACAAACGAAAACGCCCGGCTCAAGGCCGGGCGTTTTGCATTGCCGATCAGG                                                                                                     <  2:1581063/134‑1
                                                                                                                                                      GATCGGAACAAACGAAAACGCCCGGCTCAAGGCCGGTCGTTTTGCATTGCCGATCAGGCGTCCGGGTCACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCAACTTGCCGTACAAGTGCTCCAGCGCGTGATTGAGCTTGGTGGCGGCACCG         >  2:919924/1‑150
                                                                                                                                                            CACAAACGAAAACGCCCGGCTCAAGGCCGGGCGTTTTGCATTGCCGATCAGGCGTCCGGGTCACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCAGCTTGCCGTAGAAGTGCTCCAGCGCGTGATTGAGCTTGGTGGCGGCACCGTCGACT   >  1:154261/1‑150
                                                                                                                                                             ACAAACGAAAACGCCCGGCTCAAGGCCGGGCGTTTTGCATTGCCGATCAGGCGTCCGGGTCACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCAGCTTGCCGTAGAAGTGCTCCAGCGCGTGATTGAGCTTGGTGGCGGCACCGTCGACTG  >  2:1234179/1‑150
                                                                                                                                                                                                                                                                                                                   
GCCACCAACCGATTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5237414‑5237571
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatcggcaCAAACGAAAACGCCCGGCTCAAGGCCGGGCGTTTTGCATTGCCGATCAGGCGTCCGGGTCACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCAGCTTGCCGTAGAAGTGCTCCAGCGCGTGATTGAGCTTGGTGGCGGCACCGTCGACTG  <  NC_002947/5237610‑5237462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.