New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5716597	65 (1.090)	4 (0.070)	4/234	NT	6.1%	coding (49/708 nt)	PP_5019	16S rRNA (uracil(1498)‑N(3))‑methyltransferase
	?	NC_002947	= 5716614	60 (1.030)					coding (66/708 nt)	PP_5019	16S rRNA (uracil(1498)‑N(3))‑methyltransferase

CTGTTCGAGATCGGCGTGCTGTGCGGCAGCCTGATCCGCAAGCGCAGCGCCCACGACGAAACCGCCGACGACCATAACGACCAGCCACCAGCGACCCAACCGTGAACCTGTTGCTTCTTGAAGAGGCCGACTTCGTCTCGGCCAACCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5716448‑5716597 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgCCGATCAGCAAGAACGACGCGGTTGGCCGAGACGAAGTCGGCCTCTTCAAGAAGCAACAGGTTCACGGTTGGGTCGCTGGTGGCTGGTCGTTATGGTCGTCGGCGGTTTCGTCGTGGGCGCTGCGCTTGCGGATCAGGCTGCCGCACA  <  NC_002947/5716614‑5716467                                                                                                                                                                                                                                                                                                            CTGTTCGAGATCGGCGTGCTGTGCGGCAGCCTGATCCGCAAGCGCAGCGCCCACGACGAAACCGCCGACGACCATAACGACCAGCCACCAGCGACCCAACCGTGAACCTGTTGCTTCTTGAAGAGGCCGACTTCGTCTCGGCCAACCGCG                                                                                                                                                      <  1:968789/150‑1                                                                           TAACGACCAGCCACCAGCGACCCAACCGTGAACCTGTTGCTTCTTGAAGAGGCCGACTTCGTCTCGGCCAACCGCGCCGATCAGCAAGAACGACGCGGT                                                                                                                               <  1:1490980/99‑1                                                                           TAACGACCAGCCACCAGCGACCCAACCGTGAACCTGTTGCTTCTTGAAGAGGCCGACTTCGTCTCGGCCAACCGCGCCGATCAGCAAGAACGACGCGGT                                                                                                                               >  2:1490980/1‑99                                                                                     CCACCAGCGACCCAACCGTGAACCTGTTGCTTCTTGAAGAGGCCGACTTCGTCTCGGCCAACCGCGCCGATCAGCAAGAACGACGCGGTT                                                                                                                              >  1:732350/1‑90                                                                                     CCACCAGCGACCCAACCGTGAACCTGTTGCTTCTTGAAGAGGCCGACTTCGTCTCGGCCAACCGCGCCGATCAGCAAGAACGACGCGGTT                                                                                                                              <  2:732350/90‑1                                                                                     CCACCAGCGACCCAACCGTGAACCTGTTGCTTCTTGAAGAGGCCGACTTCGTCTCGGCCAACCGC                                                                                                                                                       <  1:703714/65‑1                                                                                     CCACCAGCGACCCAACCGTGAACCTGTTGCTTCTTGAAGAGGCCGACTTCGTCTCGGCCAACCGC                                                                                                                                                       >  2:703714/1‑65                                                                                                                                                     CGCCGATCAGCAAGAACGACGCGGTTGGCCGAGACGAAGTCGGCCTCTTCAAGAAGCAACAGGTTCACGGTTGGGTCGCTGGTGGCTGGTCGTTATGGTCGTCGGCGGTTTCGTCGTGGGCGCTGCGCTTGCGGATCAGGCTGCCGCACA  <  2:666684/150‑1                                                                                                                                                                                                                                                                                                            CTGTTCGAGATCGGCGTGCTGTGCGGCAGCCTGATCCGCAAGCGCAGCGCCCACGACGAAACCGCCGACGACCATAACGACCAGCCACCAGCGACCCAACCGTGAACCTGTTGCTTCTTGAAGAGGCCGACTTCGTCTCGGCCAACCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5716448‑5716597 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgCCGATCAGCAAGAACGACGCGGTTGGCCGAGACGAAGTCGGCCTCTTCAAGAAGCAACAGGTTCACGGTTGGGTCGCTGGTGGCTGGTCGTTATGGTCGTCGGCGGTTTCGTCGTGGGCGCTGCGCTTGCGGATCAGGCTGCCGCACA  <  NC_002947/5716614‑5716467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.