New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 578655157 (0.950)8 (0.170) 4/192 NT 14.9% intergenic (+38/‑93) PP_5068/trxC hypothetical protein/thioredoxin
?NC_002947 = 5786588 46 (0.960)intergenic (+75/‑56) PP_5068/trxC hypothetical protein/thioredoxin

GCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5786379‑5786551
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcgtgcccgcgaaCACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTTGCATCCCG  <  NC_002947/5786588‑5786444
                                                                                                                                                                                                                                                                                                                              
GCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCT                                                                                                                                                                          >  1:1090184/1‑150
  GGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGT                                                                                                                                                                        <  2:290366/150‑1
                      GACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGA                                                                                                                                                    >  2:54173/1‑150
                           CTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAACACC                                                                                                                                               >  2:1448465/1‑150
                                       CTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGT                                                                                                                                   >  2:736032/1‑150
                                                                   GGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAACTCCGGCGCAGCCGGTGCAAGCCATCACGGTGCCTTCTTCTCGG                                                                                                       <  2:1090184/150‑1
                                                                   GGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGG                                                                                                       <  1:1448465/150‑1
                                                                    GATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGG                                                                                                      <  1:54173/150‑1
                                                                    GATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGG                                                                                                      <  1:1001509/150‑1
                                                                    GATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGG                                                                                                      <  1:736032/150‑1
                                                                                           CGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGG                                                                                                       >  1:385642/1‑126
                                                                                           CGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGG                                                                                                       <  2:385642/126‑1
                                                                                                     GGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCT                                                                                                                                                                          >  1:1576230/1‑49
                                                                                                     GGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCT                                                                                                                                                                          <  2:1576230/49‑1
                                                                                                                                                          GAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGG                                                                                                       <  1:1589045/63‑1
                                                                                                                                                          GAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGG                                                                                                       >  2:1589045/1‑63
                                                                                                                                                              GGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGC            <  2:1604667/150‑1
                                                                                                                                                                GCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCA                                                 <  2:996037/111‑1
                                                                                                                                                                GCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCA                                                 >  1:996037/1‑111
                                                                                                                                                                  GTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAG                                                <  2:1644863/110‑1
                                                                                                                                                                  GTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAG                                                >  1:1644863/1‑110
                                                                                                                                                                     CCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGG                              >  1:510449/1‑125
                                                                                                                                                                     CCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGG                              <  2:510449/125‑1
                                                                                                                                                                        GCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTTGCATCCCG  >  2:125503/1‑150
                                                                                                                                                                        GCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTTGCATCCCG  >  1:1402640/1‑150
                                                                                                                                                                        GCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCA                                                 <  1:670254/103‑1
                                                                                                                                                                        GCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCA                                                 >  2:670254/1‑103
                                                                                                                                                                        GCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCCGATTCCCAGGTGAATGACCCGAGCCTGCGATCGCGCTGCGGAGGCTTGCATCCCG  >  2:1251033/1‑150
                                                                                                                                                                        GCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGG                                                                                                       >  2:1253590/1‑49
                                                                                                                                                                        GCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGG                                                                                                       <  1:1253590/49‑1
                                                                                                                                                                                                                                                                                                                              
GCGGGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5786379‑5786551
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcgtgcccgcgaaCACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTTGCATCCCG  <  NC_002947/5786588‑5786444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.