| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5870317 = | 40 (0.670) | 5 (0.110) | 4/182 | NT | 12.1% | intergenic (+22/+112) | PP_5144/ptsP | hypothetical protein/phosphoenolpyruvate‑dependent regulator |
| ? | NC_002947 | 5870410 = | 42 (0.930) | intergenic (+115/+19) | PP_5144/ptsP | hypothetical protein/phosphoenolpyruvate‑dependent regulator | |||||
AACTGGCCCTGAAGAACCTTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5870493‑5870317‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTGGCC > NC_002947/5870410‑5870558 AACTGGCCCTGAAGAACCTTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGT < 1:5346/150‑1 GCCCTGAAGAACCTTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAG < 1:250096/150‑1 CCCTGAAGAACCTTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGC < 1:1257328/150‑1 TGAAGAACCTTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGG < 1:711450/150‑1 TGAAGAACCTTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCAGGAGAACCCGCTCCTACCACGTACACACATCTAGGGTTGGACCCAGGCCGTCGTAGAAGCGGG > 2:403368/1‑150 GAAGAACCTTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGT > 1:895802/1‑150 AAGAACCTTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTT < 2:1452309/150‑1 TTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTATGAGCGGGTTCACCCGCGAAGA > 1:1382775/1‑150 GCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCTGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGC < 1:724850/150‑1 TTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAG > 2:1220006/1‑138 TTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAG < 1:1220006/138‑1 GGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAA < 1:1023641/127‑1 GGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAA > 2:1023641/1‑127 ATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAA > 1:285859/1‑101 ATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAA < 2:285859/101‑1 CCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAG > 2:517306/1‑150 CCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTGCAc > 2:198643/1‑149 CGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAA > 1:1260103/1‑121 CGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAA < 2:1260103/121‑1 CATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGT < 1:517306/150‑1 GCGGGTTCACCCGCGAAGAGGCCGGCACAAACGGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGC < 2:1542783/112‑1 GCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGATTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGC > 1:1542783/1‑112 GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGG < 1:1133363/140‑1 GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGG > 2:1133363/1‑140 GTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCG < 1:199398/150‑1 GTTCACCCGCGAAGAGGCCGGCACAAAAAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCG > 1:35271/1‑150 TTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGG < 1:212190/150‑1 accaGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCA < 2:724850/146‑1 CCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGC > 1:896407/1‑150 CCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGC > 1:286266/1‑150 CCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGC > 2:435339/1‑150 CCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGA > 2:1059297/1‑112 CCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGA < 1:1059297/112‑1 AAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTC > 2:1418830/1‑150 GAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCT < 1:435339/150‑1 AGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTT > 2:556496/1‑150 GCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTGG < 2:250096/150‑1 CCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTGGC < 2:286266/150‑1 CCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCCCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTGGC < 1:17202/150‑1 CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTGGCC > 1:193403/1‑150 CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTGGCC > 2:48184/1‑150 CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCG > 2:157384/1‑109 CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCG < 1:157384/109‑1 AACTGGCCCTGAAGAACCTTGGGTTGGCGCGGATGATTGGGCCTGGGGCTAATAAAACCCTGTGAGGGTGATGCTGTTTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5870493‑5870317‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTGGCC > NC_002947/5870410‑5870558 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |