| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6065591 | 49 (0.820) | 4 (0.070) | 5/228 | NT | 8.0% | coding (436/729 nt) | phoB | two‑component system DNA‑binding response regulator PhoB |
| ? | NC_002947 | = 6065597 | 46 (0.810) | coding (442/729 nt) | phoB | two‑component system DNA‑binding response regulator PhoB | |||||
TGCTCACCGCCAAGGGTGAAGAGGACAACAAGATCCAGGGCCTGGAAGTGGGCGCCGACGACTACATCACCAAGCCGTTCTCGCCGCGTGAACTGGTAGCGCGACTGAAAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGCGAGGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6065439‑6065591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgaCCTCGATCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACCAGTTCACGCGGCGAGAACGGCTTGGTGATGTAGTCGTCGGCGCCCACTTCCAGGCCCTGGATCTTGTTGTCCTCTTCACCC < NC_002947/6065597‑6065452 TGCTCACCGCCAAGGGTGAAGAGGACAACAAGATCCAGGGCCTGGAAGTGGGCGCCGACGACTACATCACCAAGCCGTTCTCGCCGCGTGAACTGGTAGCGCGACTGAAAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGCGAGGCGC > 1:701105/1‑150 GCTCACCGCCAAGGGTGAAGAGGACAACAAGATCCAGGGCCTGGAAGTGGGCGCCGACGACTACATCACCAAGCCGTTCTCGCCGCGTGAACTGGTAGCGCGACTGAAAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGCGAGGCGCC > 1:1494291/1‑150 AGCGAGGCGCCGATCGAGGTCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACCAGTTCACGCG < 1:794981/88‑1 AGCGAGGCGCCGATCGAGGTCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACCAGTTCACGCG > 2:794981/1‑88 AGCGAGGCGCCGATCGAGGTCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTC < 1:1647608/70‑1 AGCGAGGCGCCGATCGAGGTCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTC > 2:1647608/1‑70 CGAGGCGCCGATCGAGGTCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACCAGTTCACGCGGCGAGAACGGCTTGGTGATGTAGTCGTCGGCGCCCACTTCCAGGCCCTGGATCTT < 1:1607772/141‑1 CGAGGCGCCGATCGAGGTCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACCAGTTCACGCGGCGAGAACGGCTTGGTGATGTAGTCGTCGGCGCCCACTTCCAGGCCCTGGATCTT > 2:1607772/1‑141 CGCCGACCTCGATCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACCAGTTCACGCGGCGAGAACGGCTTGGTGATGTAGTCGTCGGCGCCCACTTCCAGGCCCTGGATCTTGTTGTCCTCTTCAC > 2:1270919/1‑150 GCCGACCTCGATCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACCAGTTCACGCGGCGAGAACGG > 1:1471352/1‑90 GCCGACCTCGATCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACCAGTTCACGCGGCGAGAACGG < 2:1471352/90‑1 CCGACCTCGATCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACCAGTTCACGCGGCGAGAACGGCTTGGTGATGTAGTCGTCGGCGCCCACTTCCAGGCCCTGGATCTTGTTGTCCTCTTCACCC < 1:131277/150‑1 TGCTCACCGCCAAGGGTGAAGAGGACAACAAGATCCAGGGCCTGGAAGTGGGCGCCGACGACTACATCACCAAGCCGTTCTCGCCGCGTGAACTGGTAGCGCGACTGAAAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGCGAGGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6065439‑6065591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgaCCTCGATCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACCAGTTCACGCGGCGAGAACGGCTTGGTGATGTAGTCGTCGGCGCCCACTTCCAGGCCCTGGATCTTGTTGTCCTCTTCACCC < NC_002947/6065597‑6065452 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |