New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6174837	83 (1.390)	5 (0.090)	5/232	NT	6.2%	coding (396/420 nt)	atpC	ATP synthase subunit epsilon
	?	NC_002947	= 6174865	72 (1.240)					coding (368/420 nt)	atpC	ATP synthase subunit epsilon

AGTGACATTACTGGCTACCAATCCTGGGCGGTCAGTGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6174687‑6174837 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggCCGAGGCCGCAGCCCAGCTGCGTACCGTCCAGCAAATGCGCAAAGGCAAGTAATCGGCCCCGGCTGATAACTTCTGTTGCGATTGAGTAAAAGGGTAGCCTCGGCTACCCTTTTTCTTTTTCTGTTTTCTCCCCCGGTCTTTCACT  <  NC_002947/6174865‑6174720                                                                                                                                                                                                                                                                                                           AGTGACATTACTGGCTACCAATCCTGGGCGGTCAGTGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATTGCAACAGAAGTTATCAGCCGGGGTCGATTACTTGCCTTTGCGCATTTGCTG                                                                                                                                                     <  1:452378/150‑1                TACCAATCCTGGGCGGTCAGTGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGCCGAGGCCGCAGCC                                                                                                                                      >  2:794854/1‑150                                       AAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGCCGAGGCCGCAGCCCAGCTGCGTACCGTCCAGCAAAT                                                                                                               <  1:794854/150‑1                                       AAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACG‑GTACGCAGCCCAGCTGCGTACCGTCCAGCAAATG                                                                                                              <  2:1185967/150‑1                                                                                 GCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCT                                                                                                                                                      >  1:274310/1‑69                                                                                 GCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCT                                                                                                                                                      <  2:274310/69‑1                                                                                                           AAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGCCGAGGCCGCAGCCCAGCTGCGTA                                                                                                                            <  1:1003350/69‑1                                                                                                           AAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGCCGAGGCCGCAGCCCAGCTGCGTA                                                                                                                            >  2:1003350/1‑69                                                                                                                                                    CTGGCCGAGGCCGCAGCCCAGCTGCGTACCGTCCAGCAAATGCGCAAAGGCAAGTAATCGGCCCCGGCTGATAACTTCTGTTGCGATTGAGTAAAATGGTAGCCTCGGCTACCCTTTTTCTTTTTCTGTTTTCTCCCCCGGTCTTTCACT  <  2:1483434/150‑1                                                                                                                                                                                                                                                                                                           AGTGACATTACTGGCTACCAATCCTGGGCGGTCAGTGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6174687‑6174837 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggCCGAGGCCGCAGCCCAGCTGCGTACCGTCCAGCAAATGCGCAAAGGCAAGTAATCGGCCCCGGCTGATAACTTCTGTTGCGATTGAGTAAAAGGGTAGCCTCGGCTACCCTTTTTCTTTTTCTGTTTTCTCCCCCGGTCTTTCACT  <  NC_002947/6174865‑6174720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.