New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1102893	36 (0.600)	5 (0.090)	4/224	NT	11.7%	intergenic (+27/‑91)	ttg2E/ttg2F	toluene‑tolerance protein/BolA family protein
	?	NC_002947	= 1102923	42 (0.750)					intergenic (+57/‑61)	ttg2E/ttg2F	toluene‑tolerance protein/BolA family protein

CTACTGCTGGCGTACATGCGGGATGCTCAGGCCACTGGCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTC  >  NC_002947/1102744‑1103040                                                                                                                                                      |                                                                                                                                                    cTACTGCTGGCGTACATGCGGGATGCTCAGGCCACTGGCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCG                                                                                                                                                     >  1:1614390‑M1/1‑150 (MQ=255)        tgGCGTACATGCGGGATGCTCAGGCCACTGGCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCg                                                                                                                                              >  1:1101042/1‑150 (MQ=255)        tgGCGTACATGCGGGATGCTCAGGCCACTGGCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCg                                                                                                                                              >  2:769139/1‑150 (MQ=255)          gCGTACATGCGGGATGCTCAGGCCACTGGCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGaa                                                                                                                                            >  2:899119/1‑150 (MQ=255)          gCGTACATGCGGGATGCTCAGGCCACTGGCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGaa                                                                                                                                            >  1:1522667/1‑150 (MQ=255)                    gggATGCTCAGGCCACTGGCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTg                                                                                                                                  <  1:1246500/150‑1 (MQ=255)                             aGGCCACTGGCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCa                                                                                                                         <  2:114415/150‑1 (MQ=255)                                  aCTGGAAAGGCGGGCGAGGGGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGcctgcgaagcccaacgaaggcttcgctgaccga                                                                                                                    <  2:860337‑M1/150‑34 (MQ=255)                                    tGGCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgagg                                                                                                                  >  2:1614390‑M2/1‑145 (MQ=255)                                     ggCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgaggg                                                                                                                 >  1:631060‑M2/1‑144 (MQ=255)                                      gCAAGGCGTGCGAGGTGCGTGGCATGCGTGATGATATGCGGGAAATTGCCGAGGTCTATGATGTCGATGAAGTGCTGGCAAGCTAGTGGGCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCGTCGCAGGcgagggg                                                                                                                <  2:890290‑M2/150‑8 (MQ=255)                                      gCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgcgggg                                                                                                                <  2:888332‑M2/150‑8 (MQ=255)                                      gCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgagggg                                                                                                                >  1:769139‑M2/1‑143 (MQ=255)                                        aaGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGGCAGGCACGGATAATGGCCCCTCGGTCAGCGAAGCCTTCCTTGGGCTTCGCAGGcgaggggcc                                                                                                              <  2:6231‑M2/150‑10 (MQ=255)                                               gCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGt                                                                                                       <  1:1028281/150‑1 (MQ=255)                                               gCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGt                                                                                                       <  1:899119/150‑1 (MQ=255)                                                cGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTa                                                                                                      <  2:1101042/150‑1 (MQ=255)                                                     tGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTatgatg                                                                                                 <  2:641330/150‑1 (MQ=255)                                                      gCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCACCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGAGAGGGGCTTTTTTGTATGATgg                                                                                                >  1:356990/1‑150 (MQ=255)                                                             aTGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCtttttt                                                                                                         <  1:512319/134‑1 (MQ=255)                                                             aTGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCtttttt                                                                                                         >  2:512319/1‑134 (MQ=255)                                                                   gatgatATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTa                                                                                                      <  2:907840/131‑1 (MQ=255)                                                                   gatgatATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTa                                                                                                      >  1:907840/1‑131 (MQ=255)                                                                             gggAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGaa                                                                                                                                            <  2:1296289/83‑1 (MQ=255)                                                                             gggAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGaa                                                                                                                                            >  1:1296289/1‑83 (MQ=255)                                                                             gggAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGcc                                                                         <  2:491090/150‑1 (MQ=255)                                                                               gAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTACGATGGCCGCCCCGTGCGCATCGGGCGCCGa                                                                       <  2:1007928/150‑1 (MQ=255)                                                                                aaaTTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGcctgcgaagcccaacgaaggcttcgctgaccgaggg                                                                                                                 >  2:402534‑M1/1‑71 (MQ=255)                                                                                aaaTTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGcctgcgaagcccaacgaaggcttcgctgaccgaggg                                                                                                                 <  1:402534‑M1/107‑37 (MQ=255)                                                                                 aaTTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGAtt                                                                     <  2:302420/150‑1 (MQ=255)                                                                                       cGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGcctgcgaagcccaacgaaggcttcgctgaccga                                                                                                                    >  2:1279297‑M1/1‑64 (MQ=255)                                                                                       cGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGcctgcgaagcccaacgaaggcttcgctgaccga                                                                                                                    <  1:1279297‑M1/97‑34 (MQ=255)                                                                                       cGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGtt                                                               <  2:1522667/150‑1 (MQ=255)                                                                                           gTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGa                                                             <  1:388122/148‑1 (MQ=255)                                                                                           gTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGa                                                             >  2:388122/1‑148 (MQ=255)                                                                                              tATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATg                                                        >  2:1025905/1‑150 (MQ=255)                                                                                                     tcGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCt                                                                                                                                        >  2:168344/1‑63 (MQ=255)                                                                                                     tcGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCt                                                                                                                                        <  1:168344/63‑1 (MQ=255)                                                                                                          ggagggCTGGGAAGTTAGTGGCCAGGCACGGATGATGGCCCCGCGGTCAGGGAAGCCTTCGTTGGGCTGCGCAGGCGAGGGGCTTTTTGGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGCGCATGCAGGCCGTAGaa                                            <  2:561686/145‑1 (MQ=255)                                                                                                                 tGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTaaaa                                     >  2:123379/1‑150 (MQ=255)                                                                                                                    cAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCt                                  <  1:1025905/150‑1 (MQ=255)                                                                                                                     aaGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCtt                                 <  1:1609966/150‑1 (MQ=255)                                                                                                                     aaGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCtt                                 >  2:379369/1‑150 (MQ=255)                                                                                                                                     aCGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTg                 <  1:1327701/150‑1 (MQ=255)                                                                                                                                          tgatgGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCggg            <  1:123379/150‑1 (MQ=255)                                                                                                                                              ggCCCCTCGcctgcgaagcccaaggaaggcttcgctgaccgaggggccattatccgtgcctgcccactagcttgccagcacttcatcgagatcatagacctcggcaatttcccgcatatcatcaggcatgccacgcacctcgcacgcctt        <  2:6231‑M1/150‑142 (MQ=255)                                                                                                                                                ccccTCGcctgcgacgcccaacgaaggcttcgctgaccgaggggccatcatccgtgcctgcccactagcttgccagcacttcatcgacatcatagacctcggcaatttcccgcatatcatcacgcatgccacgcacctcgcacgccttgc      <  2:890290‑M1/150‑144 (MQ=255)                                                                                                                                                ccccTCGcctgcgaagcccaacgaaggcttcgctgaccgaggggccatcatccgtgcctggccactagcttgccagcacttcatcgagatcatagacctcggcaatttcccgcatatcatcaggcatgccacgcacctcgcacgccttgc      >  1:769139‑M1/1‑7 (MQ=255)                                                                                                                                                ccccGCGcctgcgaagcccaacgaaggcttcgctgaccgaggggccatcatccgtgcctggccactagcttgccagcacttcatcgagatcatagacctcggcaatttcccgcatatcatcaggcatgccacgcacctcgcacgccttgc      <  2:888332‑M1/150‑144 (MQ=255)                                                                                                                                                 cccTCGcctgcgaagcccaacgaaggcttcgctgaccgaggggccatcatccgtgcctggccactagcttgccagcacttcatcgagatcatagacctcggcaatttcccgcatatcatcaggcatgccacgcacctcgcacgccttgcc     >  1:631060‑M1/1‑6 (MQ=255)                                                                                                                                                 cccTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgaggggccatcatccgtgcctggccactagcttgccagcacttcatcgagatcatagacctcggcaattt                                                <  1:402534‑M2/107‑72 (MQ=255)                                                                                                                                                 cccTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgaggggccatcatccgtgcctggccactagcttgccagcacttcatcgagatcatagacctcggcaattt                                                >  2:402534‑M2/1‑36 (MQ=255)                                                                                                                                                 cccTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTgc                                                                                     >  1:423096/1‑70 (MQ=255)                                                                                                                                                 cccTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTgc                                                                                     <  2:423096/70‑1 (MQ=255)                                                                                                                                                 cccTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCgg     <  1:379369/150‑1 (MQ=255)                                                                                                                                                  ccTCGcctgcgaagcccaacgaaggcttcgctgaccgaggggccatcatccgtgcctggccactagcttgccagcacttcatcgagatcatagacctcggcaatttcccgcatatcatcaggcatgccacgcacctcgcacgccttgcca    >  2:1614390‑M1/1‑5 (MQ=255)                                                                                                                                                    tCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgaggggccatcatccgtgcctggccactagcttgccagcacttcatcgagatcatagacctcggcaatttcccgcatatcatcaggcatgccacgcccctcgcccgcctttccagt  <  2:860337‑M2/150‑118 (MQ=255)                                                                                                                                                    tCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgaggggccatcatccgtgcctggccactagcttgccagcacttcatcgagatcatagacctcg                                                       <  1:1279297‑M2/97‑65 (MQ=255)                                                                                                                                                    tCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGcgaggggccatcatccgtgcctggccactagcttgccagcacttcatcgagatcatagacctcg                                                       >  2:1279297‑M2/1‑33 (MQ=255)                                                                                                                                                      |                                                                                                                                                    CTACTGCTGGCGTACATGCGGGATGCTCAGGCCACTGGCAAGGCGTGCGAGGTGCGTGGCATGCCTGATGATATGCGGGAAATTGCCGAGGTCTATGATCTCGATGAAGTGCTGGCAAGCTAGTGGCCAGGCACGGATGATGGCCCCTCGGTCAGCGAAGCCTTCGTTGGGCTTCGCAGGCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTC  >  NC_002947/1102744‑1103040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.