New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2314387 =	48 (0.800)	4 (0.070)	4/232	NT	8.0%	coding (781/888 nt)	PP_2036	4‑hydroxy‑tetrahydrodipicolinate synthase
	?	NC_002947	2314415 =	46 (0.790)					coding (753/888 nt)	PP_2036	4‑hydroxy‑tetrahydrodipicolinate synthase

AAGGCTGCCCGACAGCGACAGGCTGCCGGGCAGGTTTGGGCGTCAGTTGGTCAGCGCCACCAGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGAACAACGCACGGGCTTCGGCCAGATCGCCTTGTTGTACGGCGTCCCACAGCGCCAGGTTGAGTGCCGGGATCAGGTT  >  NC_002947/2314238‑2314531                                                                                                                                                      |                                                                                                                                                     ccggcgccacgggctggtgtaccgccgcgcccaacctgatcccggcactcaacctggcgctgtgggacgccgtacaacaaggcgatctggccgaagcccgtgcgttgttctaccgccagtacgagctgctggagtacatcacccgccgtg                                                                                                                                                      <  1:168503‑M1/1‑1 (MQ=255)  aGGCTGCCCGACAGCGACAGGCTGCCGGGCAGGTTTGGGCGTCAGTTGGTCAGCGCCACCAGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAgg                                                                                                                                                     <  1:1006986/150‑1 (MQ=255)  aGGCTGCCCGACAGCGACAGGCTGCCGGGCAGGTTTGGGCGTCAGTTGGTCAGCGCCACCAGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAgg                                                                                                                                                     <  1:265219/150‑1 (MQ=255)                 gacagGCTGCCGGGCAGGTTTGGGCGTCAGTTGGTCAGCGCCACCAGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGAtggtg                                                                                                                                  >  2:1410499/1‑150 (MQ=255)                 gacagGCTGCCGGGCAGGTTTGGGCGTCAGTTGGTCAGCGCCACCAGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGAtggtg                                                                                                                                  >  1:155191/1‑150 (MQ=255)                 gacagGCTGCCGGGCAGGTTTGGGCGTCAGTTGGTCAGCGCCACCAGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGAtggtg                                                                                                                                  <  1:1486111/150‑1 (MQ=255)                    agGCTGCTGGGCAGGTTTGGGCGTCAGTTGGTCAGCGCCACCAGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTc                                                                                                                               <  1:194002/150‑1 (MQ=255)                    agGCTGCCGGGCAGGTTTGGGCGTCAGTTGGTCAGCGCCACCAGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTc                                                                                                                               <  2:337864/150‑1 (MQ=255)                             ggCAGGTTTGGGCGTCAGTTGGTCAGCGCCACCAGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGAtggt                                                                                                                                   >  1:133360/1‑137 (MQ=255)                             ggCAGGTTTGGGCGTCAGTTGGTCAGCGCCACCAGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGAtggt                                                                                                                                   <  2:133360/137‑1 (MQ=255)                                      gatcccggcactcaacctggcgctgtgggacgccgtacaacaaggcgatctggccgaagcccgtgcgttgttctaccgccagtacgagctgctggagtacatcacccgccgtGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTg                                                                                                             >  2:168503‑M1/113‑150 (MQ=255)                                       atcccggcactcaacctggcgctgtgggacgccgtacaacaaggcgatctggccgaagcccgtgcgttgttctaccgccagtacgagctgctggagtacatcacccgccgtGGCCTGCCGGCCTTGATGGTGGTCGGCAGGCCAcggcgg                                                                                                                >  1:38639‑M1/112‑150 (MQ=255)                                        gCGTCAGTTGGTCAGCGCCACCAGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGAAGGTTTGGTGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGAt                                                                                                           >  1:1433399/1‑150 (MQ=255)                                               ttGGTCAGCGCCACCAGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTcc                                                                                                    >  2:436122/1‑150 (MQ=255)                                                         ccaccaGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCAcggcgg                                                                                                                >  1:551327/1‑128 (MQ=255)                                                         ccaccaGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCAcggcgg                                                                                                                <  2:551327/128‑1 (MQ=255)                                                          caccaGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGAGGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTa                                                                                         >  1:1601200/1‑150 (MQ=255)                                                           accaGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGTAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGa                                                                                                            >  2:13993/1‑130 (MQ=255)                                                           accaGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGTAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGa                                                                                                            <  1:13993/130‑1 (MQ=255)                                                           accaGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGt                                                                                                              <  2:319524/128‑1 (MQ=255)                                                           accaGCAGGCTTTTCAGGTGGTTGCTACCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGt                                                                                                              >  1:319524/1‑128 (MQ=255)                                                             cagcagGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAgg                                                                                                                                                     >  1:1026936/1‑91 (MQ=255)                                                             cagcagGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAgg                                                                                                                                                     <  2:1026936/91‑1 (MQ=255)                                                              tctagGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTgg                                                                                     <  1:1414335/147‑1 (MQ=255)                                                                cagGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCg                                                                                   <  1:436122/150‑1 (MQ=255)                                                                  ggCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGAAGGACACGGCGGGAGAGTTACTGCAGCAGCTCGTACTGGcaga                                                                                 >  2:1414335/1‑147 (MQ=255)                                                                   gCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTa                                                                                <  2:1424980/150‑1 (MQ=255)                                                                   gCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTa                                                                                <  2:1601200/150‑1 (MQ=255)                                                                          aGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGaacaac                                                                         <  1:1446173/150‑1 (MQ=255)                                                                          aGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGaacaac                                                                         <  2:155191/150‑1 (MQ=255)                                                                                ttGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGAACAACGCACgg                                                                   <  2:579322/150‑1 (MQ=255)                                                                                              aTCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTgg                                                                                     <  2:289547/118‑1 (MQ=255)                                                                                              aTCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTgg                                                                                     >  1:289547/1‑118 (MQ=255)                                                                                              aTCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGAACAACGCACGGGCTTCGGCCAGATc                                                     >  1:1388605/1‑150 (MQ=255)                                                                                              aTCCAGCCGCGGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTGGATGGTGGTCGGCCGGCCACGGCGGGTGATGTACTCCAGCAACTCGTACTTGCGGTAGCACAACGCCCGGTCTTCCGCCAGATc                                                     >  2:151172/1‑150 (MQ=255)                                                                                                   gCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGAACAACGCACGGGCTTCGGCCAGATCGCCtt                                                >  1:1628190/1‑150 (MQ=255)                                                                                                         gCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGAACAACGCACGGGCTTCGGCCAGAACGCCTTGTTGTa                                          >  1:1141943/1‑150 (MQ=255)                                                                                                          cAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGAACAACGCACGGGCTTCGGCCAGATCGCCTTGTTGTAc                                         >  2:968965/1‑150 (MQ=255)                                                                                                           aGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGAACAACGCACGGGCTTCGGCCAGATCGCCTTGTTGTACg                                        <  2:1533349/150‑1 (MQ=255)                                                                                                               gCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGAACAACGCACGGGCTTCGGc                                                           <  2:1496428/127‑1 (MQ=255)                                                                                                               gCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGAACAACGCACGGGCTTCGGc                                                           >  1:1496428/1‑127 (MQ=255)                                                                                                                 ccgccagtacgagctgctggagtacatcacccgccgtGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCAcgg                                                                                                                   >  2:869046‑M1/38‑69 (MQ=255)                                                                                                                 ccgccagtacgagctgctggagtacatcacccgccgtGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCAcgg                                                                                                                   <  1:869046‑M1/32‑1 (MQ=255)                                                                                                                       ggggCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGAACAACGCACGGGCTTCGGCCAGATCGCCTTGTTGTACGGCGTCCCACAgc                            <  1:968965/150‑1 (MQ=255)                                                                                                                               gACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGAACAACGCACGGGCTTCGGCCAGATCGCCTTGTTGTACGGCGTCCCACAGCGCCAGGtt                    >  1:614272/1‑150 (MQ=255)                                                                                                                                aCATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTa                                                                                         >  2:1088921/1‑80 (MQ=255)                                                                                                                                aCATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTa                                                                                         <  1:1088921/80‑1 (MQ=255)                                                                                                                                    ccTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCggg                                                                                                               >  2:311488/1‑54 (MQ=255)                                                                                                                                    ccTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCggg                                                                                                               <  1:311488/54‑1 (MQ=255)                                                                                                                                      tGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGAACAACGCACGGGCTTCGGCCAGATCGCCTTGTTGTACGGCGTCCCACAGCGCCAGGTTGAGTGcc             <  1:883936/150‑1 (MQ=255)                                                                                                                                       ggCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGAACAACGCACGGGCTTCGGCCAGATCGCCTTGTTGTCCGGCGCCCCACAGCGCCACGTTTAGTTCCg            <  2:919453/150‑1 (MQ=255)                                                                                                                                        gCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTAc                                                                                        <  2:1124740/73‑1 (MQ=255)                                                                                                                                        gCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTAc                                                                                        >  1:1124740/1‑73 (MQ=255)                                                                                                                                          cGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCgg                                                                                  >  1:798925/1‑77 (MQ=255)                                                                                                                                          cGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCgg                                                                                  <  2:798925/77‑1 (MQ=255)                                                                                                                                           gAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGAACAACGCACGGGCTTCGGc                                                           <  2:108829/99‑1 (MQ=255)                                                                                                                                           gAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGAACAACGCACGGGCTTCGGc                                                           >  1:108829/1‑99 (MQ=255)                                                                                                                                                 tttCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGAACAACGCACGGGCTTCGGCCAGAACGCCTTGTTGTACGGCGTCCCACAGCGCCAGGTTGAGTGCCGGGATCAGGtt  <  2:1141943/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     AAGGCTGCCCGACAGCGACAGGCTGCCGGGCAGGTTTGGGCGTCAGTTGGTCAGCGCCACCAGCAGGCTTTTCAGGTGGTTGCTGCCTTGCGCATCCAGCGGCTGCAGGGGCAGGCGTGGGGCGCCGACATCCTGGCCGAGCATTTTCAGGCC‑‑‑‑GGCCTTGATGGTGGTCGGCAGGCCACGGCGGGTGATGTACTCCAGCAGCTCGTACTGGCGGTAGAACAACGCACGGGCTTCGGCCAGATCGCCTTGTTGTACGGCGTCCCACAGCGCCAGGTTGAGTGCCGGGATCAGGTT  >  NC_002947/2314238‑2314531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.