| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2414780 = | 40 (0.670) | 5 (0.090) | 5/224 | NT | 9.7% | intergenic (+279/‑66) | PP_2114/PP_2115 | transposase/hypothetical protein |
| ? | NC_002947 | 2414873 = | 56 (1.000) | coding (28/198 nt) | PP_2115 | hypothetical protein | |||||
AGCGAACAGTCCATTCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAA > NC_002947/2414631‑2414928 | aGCGAACAGTCCATTCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCg > 2:1382259/1‑150 (MQ=255) aaCAGTCCATTCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCt > 1:644003/1‑150 (MQ=255) caagcacggctttcaaacccagcgctcttgatctcgatcttgatcttgatctcgatcttgatcttgatcttgatcttgatcttgatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaGGCCTTg > 1:616950‑M1/144‑150 (MQ=255) tCCATTCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTGACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGAGCTGCGCTTCGGGGTCCCCTCACTCCGGCCTTGCTc > 2:388261/1‑150 (MQ=255) tCCATTCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAGCGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTc > 1:558709/1‑150 (MQ=255) tCCATTCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTc > 2:1124758/1‑150 (MQ=40) aTTCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCg > 2:97956/1‑150 (MQ=39) ttCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCgg < 2:34144/150‑1 (MQ=38) ttCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCgg < 2:1417081/150‑1 (MQ=38) cgcgATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAGCGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCa < 2:558709/150‑1 (MQ=37) gCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACcgc < 1:97956/150‑1 (MQ=35) gACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCgcgc > 1:1458374/1‑150 (MQ=35) tCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGCCAAACTGAAAGCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGccc < 2:863275/150‑1 (MQ=11) tCACCTTTTAGCCCCTACGGCGCCTAACTTTTTGCTAAACGCGGGAAAAAGCAACCAAAAAACGCTGCGCTCCCATCAGCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCGCGTCAGGACCGCGCCGAAGGccc > 2:837237/1‑150 (MQ=11) cACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGcccc > 1:1424158/1‑150 (MQ=32) aCCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGaa > 2:1344042/1‑143 (MQ=12) aCCTTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGaa < 1:1344042/143‑1 (MQ=12) tCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTgg < 2:644003/150‑1 (MQ=31) tCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCAATCCTgg < 2:883816/150‑1 (MQ=14) ctcgatcttgatcttgatcttgatcttgatcttgatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGa > 1:303916‑M1/94‑150 (MQ=255) aaCCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCATCCCTCCGGCATTGATAAAGGCAGCTTCGCGCTGTTGGCCACCGCCTGGGGCCTCTTGCTGTTGTCGGTCATCCATGCCCGTCACCTGCCTTc < 2:1421285/150‑1 (MQ=2) ccAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCa > 2:1407954/1‑150 (MQ=32) cAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCaa > 2:1460765/1‑150 (MQ=32) aaaaaCGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAgg > 2:1307992/1‑150 (MQ=32) tGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGCTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCCAGGCCTGCGtt > 1:827164/1‑150 (MQ=17) ttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGc > 2:1426484‑M1/51‑142 (MQ=255) ttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGc < 1:1426484‑M1/92‑1 (MQ=255) gcgcTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCGTCTCAAGGCCTGCGTTc < 2:965725/150‑1 (MQ=17) cgcTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCg < 2:1255120/150‑1 (MQ=32) cgcTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCg < 1:1407954/150‑1 (MQ=32) gcTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCgg > 1:178162/1‑150 (MQ=32) ccATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGcctc < 1:1382259/150‑1 (MQ=32) atcatcCGGCCCCTTCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGTcctcct < 1:388261/150‑1 (MQ=17) cctcCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGa > 2:602638/3‑150 (MQ=17) cGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTc > 2:491702/1‑150 (MQ=32) cttgatcttcgcgacttcaggaggccgaacgcaGGCCTTGc < 1:170917‑M1/8‑1 (MQ=255) cttgatcttcgcgacttcaggaggccgaacgcaGGCCTTGc > 2:170917‑M1/34‑41 (MQ=255) ccccTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTcgcg < 1:992413/150‑1 (MQ=32) ccTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaa < 1:572241/150‑1 (MQ=32) tgcgctgcgcTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaaga < 2:374095/150‑1 (MQ=32) tgcgctgcgcTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaaga < 1:1307992/150‑1 (MQ=32) tgcgctgcgcTCCGGGCTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGGCGTCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaaga < 1:837237/150‑1 (MQ=255) ttcgcgacttcaggaggccgaacgcaGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCg < 2:573988‑M1/86‑1 (MQ=255) ttcgcgacttcaggaggccgaacgcaGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCg > 1:573988‑M1/27‑112 (MQ=255) ggggTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaaggccaaaagcaagat > 2:859909/1‑150 (MQ=255) tCCCCTCCCTCCGGCCTTGCTCCCGGCAGATCCACGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaag < 2:178162/150‑1 (MQ=255) ccccTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaaga < 2:1589289/150‑1 (MQ=32) ccTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCATTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatc > 2:1040765/1‑150 (MQ=17) cTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGtt < 2:754620/107‑1 (MQ=33) cTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGtt > 1:754620/1‑107 (MQ=33) cGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaa < 2:933546/150‑1 (MQ=32) | AGCGAACAGTCCATTCGCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTC‑AGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAA > NC_002947/2414631‑2414928 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |