New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5079219 =	51 (0.850)	6 (0.110)	6/228	NT	10.9%	noncoding (58/77 nt)	PP_t56	tRNA‑Arg
	?	NC_002947	5079392 =	50 (0.880)					noncoding (35/77 nt)	PP_t55	tRNA‑Arg

TGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTC  >  NC_002947/5079074‑5079359                                                                                                                                                  |                                                                                                                                              tGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAAc                                                                                                                                           <  1:1632730/150‑1 (MQ=255)     gCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑Gc                                                                                                                                      <  1:37815/150‑1 (MQ=255)     gCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑Gc                                                                                                                                      <  1:1364499/150‑1 (MQ=255)          tCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCg                                                                                                                                 >  1:1009653/1‑150 (MQ=255)             gCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTc                                                                                                                              >  2:34670/1‑150 (MQ=255)                    cAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGt                                                                                                                       >  2:1313936/1‑150 (MQ=255)                    cAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGt                                                                                                                       >  1:583035/1‑150 (MQ=255)                          acacCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGa                                                                                                                 <  1:1313936/150‑1 (MQ=255)                             ccGAAATCATTACAGAAGAGCGTAGATCGACAGGCTAAAGAATTCATTGGCGAACAAACAAAAAGCGCGCTCTATGGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGCACCT‑GCGACCGCTCGGTTCGTAGCCGAGTa                                                                                                              <  1:300138/150‑1 (MQ=38)                                cAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTGTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTActc                                                                                                           >  2:132501/1‑150 (MQ=255)                                    cATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGAc                                                                                                                                   >  1:1341923/1‑122 (MQ=255)                                    cATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGAc                                                                                                                                   <  2:1341923/122‑1 (MQ=255)                                         cAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCt                                                                                                  <  2:286450/150‑1 (MQ=255)                                              gagCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCt                                                                                             >  2:447105/1‑150 (MQ=255)                                                         gACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTg                                                                                  >  2:1195776/1‑150 (MQ=255)                                                          aCAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGa                                                                                                >  2:426980/1‑135 (MQ=255)                                                          aCAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGa                                                                                                <  1:426980/135‑1 (MQ=255)                                                          aCAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGa                                                                                 <  1:447105/150‑1 (MQ=255)                                                           cAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGAt                                                                                >  2:448465/1‑150 (MQ=255)                                                               cTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTa                                                                            >  1:1082444/1‑150 (MQ=255)                                                                  aaGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGtt                                                                         >  2:555788/1‑150 (MQ=255)                                                                       ttCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGa                                                                    <  2:594283/150‑1 (MQ=255)                                                                       ttCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGa                                                                    <  2:583035/150‑1 (MQ=255)                                                                           ttGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGa                                                                                         <  2:416090/125‑1 (MQ=255)                                                                           ttGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGa                                                                                         >  1:416090/1‑125 (MQ=255)                                                                                     aacaaaAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTg                                                      <  1:448465/150‑1 (MQ=255)                                                                                     aacaaaAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCACGTTACCACTg                                                      >  2:5457/1‑150 (MQ=255)                                                                                        aaaaaGCCCGCTCAATAGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAg                                                                                        <  1:1036262/113‑1 (MQ=255)                                                                                        aaaaaGCCCGCTCAATAGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAg                                                                                        >  2:1036262/1‑113 (MQ=255)                                                                                          tggtttaaaactgccaatcgcggactcatagctcagctggatagagtactcggctaCGAACCT‑GCGACCGCTCGGTTCGTAGCCGa                                                                                                                 >  1:933586‑M1/57‑86 (MQ=255)                                                                                          tggtttaaaactgccaatcgcggactcatagctcagctggatagagtactcggctaCGAACCT‑GCGACCGCTCGGTTCGTAGCCGa                                                                                                                 <  2:933586‑M1/30‑1 (MQ=255)                                                                                             gCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTa                                                 <  1:519916/147‑1 (MQ=255)                                                                                             gCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTa                                                 >  2:519916/1‑147 (MQ=255)                                                                                              cccGCTCAATAGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGa                                             >  2:962793/1‑150 (MQ=255)                                                                                                cGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGaaa                                           >  2:474856/1‑150 (MQ=255)                                                                                                 gCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAAt                                          <  1:555788/150‑1 (MQ=255)                                                                                                 gCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTAGCCAACTAAGCTATGCGTCCGCGATGGGAATTTTATCACAGGGTAACAGTGTCTTAATGAAAt                                          >  2:645983/1‑150 (MQ=18)                                                                                                  ctctATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTAt                                                                                           >  1:348566/1‑100 (MQ=255)                                                                                                  ctctATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTAt                                                                                           <  2:348566/100‑1 (MQ=255)                                                                                                  aactgccaatcgcggactcatagctcagctggatagagtactcggctaCGAACCT‑GCGACCGCTCGGTTCg                                                                                                                        <  2:1284778‑M1/23‑1 (MQ=255)                                                                                                  aactgccaatcgcggactcatagctcagctggatagagtactcggctaCGAACCT‑GCGACCGCTCGGTTCg                                                                                                                        >  1:1284778‑M1/49‑71 (MQ=255)                                                                                                           gCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCaa                                <  1:962793/150‑1 (MQ=255)                                                                                                           gCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCaa                                <  2:367635/150‑1 (MQ=255)                                                                                                             gggCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCa                                                                 >  1:1021761/1‑115 (MQ=255)                                                                                                             gggCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCa                                                                 <  2:1021761/115‑1 (MQ=255)                                                                                                                  ttttGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAAc                         <  1:1195776/150‑1 (MQ=255)                                                                                                                       aTGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTAt                                                                                           <  1:731446/79‑1 (MQ=255)                                                                                                                       aTGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTAt                                                                                           >  2:731446/1‑79 (MQ=255)                                                                                                                       aTGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACtt                    <  1:474856/150‑1 (MQ=255)                                                                                                                          gggTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCaa                 <  2:1009653/150‑1 (MQ=255)                                                                                                                          gggTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCaa                 <  1:132501/150‑1 (MQ=255)                                                                                                                            gTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTAt                                                                                           <  2:1532064/74‑1 (MQ=34)                                                                                                                            gTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTAt                                                                                           >  1:1532064/1‑74 (MQ=34)                                                                                                                                   ggACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTc                   <  2:1540670/139‑1 (MQ=255)                                                                                                                                   ggACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTc                   >  1:1540670/1‑139 (MQ=255)                                                                                                                                      agtactcggctaCGAACCGAGCGGTCGCA‑GGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGc        <  1:556287‑M1/135‑1 (MQ=255)                                                                                                                                      agtactcggctaCGAACCGAGCGGTCGCA‑GGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGc        >  2:556287‑M1/13‑147 (MQ=255)                                                                                                                                         agcagGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGTTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTc  >  1:1588190/1‑150 (MQ=255)                                                                                                                                             ggATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTAc                                                           >  1:84024/1‑89 (MQ=255)                                                                                                                                             ggATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTAc                                                           <  2:84024/89‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                              TGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATGGGGTATGGCGGACTCAGCAGGATTCGAACCT‑GCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTC  >  NC_002947/5079074‑5079359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.