New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1025270 =	61 (1.020)	4 (0.090)	4/186	NT	9.4%	intergenic (‑121/+108)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1025363 =	30 (0.650)					intergenic (‑214/+15)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein

TGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCG  >  NC_002947/1025214‑1025490                                                                                                                                                      |                                                                                                                                 tGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCg                                                                                                                                  <  2:1487436/150‑1 (MQ=255)        ggTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTgg                                                                                                                           <  2:572035/150‑1 (MQ=255)        ggTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTgg                                                                                                                           <  1:898109/150‑1 (MQ=255)        ggTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTgg                                                                                                                           <  1:1066810/150‑1 (MQ=255)              gcgGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACg                                                                                                                     >  2:136672/1‑150 (MQ=255)                       ccGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTg                                                                                                                            >  2:59692/1‑134 (MQ=255)                       ccGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTg                                                                                                                            <  1:59692/134‑1 (MQ=255)                                    gggCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCg                                                                                                                                  <  1:1228045/115‑1 (MQ=255)                                    gggCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCg                                                                                                                                  >  2:1228045/1‑115 (MQ=255)                                            tgtTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCAt                                                                                      >  1:1341409/1‑150 (MQ=255)                                                 gCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGCAGGCGCGAGGTCTAGCTAACGCTTAGTCAACACTCACACCGGAAAAAATCATTgcc                                                                                  >  2:42779/1‑149 (MQ=255)                                                      tCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCAt                                                                                      <  2:342696/140‑1 (MQ=255)                                                      tCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCAt                                                                                      >  1:342696/1‑140 (MQ=255)                                                         GGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACgg                                                                         >  2:1341409‑M1/1‑150 (MQ=255)                                                          GCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAGGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACggg                                                                        <  2:1415767‑M1/150‑1 (MQ=255)                                                          GCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTAACACCGG‑AAACATCATTGCGCCTAAACggg                                                                        <  2:93214‑M1/150‑1 (MQ=255)                                                            CTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCt                                                                      >  2:720992‑M1/1‑150 (MQ=255)                                                             TCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGCGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTg                                                                     <  1:111884‑M1/150‑1 (MQ=255)                                                             TCTTCGCGGGCAAGCCCGCTCCCTCAGGGAGGGCGCAGTGTCCGAACCTGTCGAGTTCCTGTGGGAGCGGGATTGCCCGCGGAGAGGCCGGGACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTg                                                                     <  1:467673‑M1/150‑1 (MQ=255)                                                              CTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACggg                                                                        >  2:193476‑M1/1‑146 (MQ=255)                                                              CTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACggg                                                                        <  1:193476‑M1/146‑1 (MQ=255)                                                                     GGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGaa                                                             >  1:716144‑M1/1‑150 (MQ=255)                                                                        aagcccgctcccacaggatctcgacaggttcggacactgcaccctacctgagggagcgggcttgcccgcgaagaggccGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTg                                                          >  1:211470‑M2/79‑150 (MQ=255)                                                                        AAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAGGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTg                                                          >  1:1415767‑M1/1‑150 (MQ=255)                                                                         AGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTgg                                                         >  1:61738‑M1/1‑150 (MQ=255)                                                                         AGCCCGCCCCCGCAGGTAGGGGGCAGTGTCCGAGCCTGTCGAGATCCTGTGGGAGCGGGCTCGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAACCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTgg                                                         >  2:467673‑M1/1‑150 (MQ=255)                                                                            CCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGaa                                                      <  2:960650‑M1/150‑1 (MQ=255)                                                                             cgctcccacaggatctcgacaggttcggacactgcgccctacctgagggagcgggcttgcccgcgaagaggccGGTACTGGCTAACGCTTAATCAaca                                                                                                          <  1:1619087‑M2/25‑1 (MQ=255)                                                                             cgctcccacaggatctcgacaggttcggacactgcgccctacctgagggagcgggcttgcccgcgaagaggccGGTACTGGCTAACGCTTAATCAaca                                                                                                          >  2:1619087‑M2/74‑98 (MQ=255)                                                                                tcccacaggatctcgacaggttcggacactgcaccctacctgagggagcgggcttgcccgcgaagaggccGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCt                                                  <  2:211470‑M2/80‑1 (MQ=255)                                                                                 CCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCtt                                                 >  1:93214‑M1/1‑150 (MQ=255)                                                                                  CCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCACACGGGCTGACCTTGAACTGGGAAAcc                                                   <  1:1183‑M1/147‑1 (MQ=255)                                                                                  CCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAAcc                                                   >  2:1183‑M1/1‑147 (MQ=255)                                                                                   CTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGa                                               <  2:1575644‑M1/150‑1 (MQ=255)                                                                                      aGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGc                                            <  2:111884/150‑1 (MQ=255)                                                                                        gTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTa                                          >  1:947352/1‑150 (MQ=255)                                                                                          aGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAg                                        <  1:136672/150‑1 (MQ=255)                                                                                           gggCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGAcagatcgg                                       >  1:208200/1‑143 (MQ=255)                                                                                            ggCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCAt                                                                                      <  2:1430541/102‑1 (MQ=255)                                                                                            ggCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCAt                                                                                      >  1:1430541/1‑102 (MQ=255)                                                                                                cAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCggctg                                  <  2:1139301/150‑1 (MQ=255)                                                                                                     tCCGAACCTGTCGAGATCCCGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGAc                                                                   <  2:785613/112‑1 (MQ=255)                                                                                                     tCCGAACCTGTCGAGATCCCGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGAc                                                                   >  1:785613/1‑112 (MQ=255)                                                                                                        gAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGa                          >  2:578850/1‑150 (MQ=255)                                                                                                         aaCCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGAt                         <  1:578850/150‑1 (MQ=255)                                                                                                         aaCCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGAt                         >  1:78880/1‑150 (MQ=255)                                                                                                         aaCCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGAt                         <  2:947352/150‑1 (MQ=255)                                                                                                         aaCCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAAAACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGAt                         >  2:346693/1‑150 (MQ=255)                                                                                                          aCCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGc                                                                                                                    >  2:534047/1‑59 (MQ=255)                                                                                                          aCCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGc                                                                                                                    <  1:534047/59‑1 (MQ=255)                                                                                                                 gagaTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑GAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTACGCGGCTGGCTCACGATGGAATgcg                 >  2:1066612/1‑150 (MQ=255)                                                                                                                 gagaTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCtt                                                                >  1:1125486/1‑103 (MQ=255)                                                                                                                 gagaTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCtt                                                                <  2:1125486/103‑1 (MQ=255)                                                                                                                 gagaTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATgcg                 >  2:1134009/1‑150 (MQ=255)                                                                                                                                cgggcttgcccgcgaagaggccGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCg  <  1:263232‑M2/128‑1 (MQ=255)                                                                                                                                   gcttgcccgcgaagaggccGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGaa                     >  1:1559263‑M2/20‑128 (MQ=255)                                                                                                                                   gcttgcccgcgaagaggccGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGaa                     <  2:1559263‑M2/109‑1 (MQ=255)                                                                                                                                         ccgcgaagaggccGGTACTGGCTAACGCTTAATCAaca                                                                                                          <  2:406250‑M2/25‑1 (MQ=255)                                                                                                                                         ccgcgaagaggccGGTACTGGCTAACGCTTAATCAaca                                                                                                          >  1:406250‑M2/14‑38 (MQ=255)                                                                                                                                                      |                                                                                                                                 TGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGG‑AAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCG  >  NC_002947/1025214‑1025490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.