| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1421210 | 48 (0.800) | 3 (0.050) | 3/230 | NT | 5.9% | coding (683/891 nt) | PP_1245 | hypothetical protein |
| ? | NC_002947 | = 1421225 | 49 (0.850) | coding (698/891 nt) | PP_1245 | hypothetical protein | |||||
CCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTGCCGCCCGGTCACCGTCAGCCTGAAATCGCAAAGCGGCCAGACCGAACAAGAGCAGA > NC_002947/1421076‑1421374 | ccACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGa > 2:140200/1‑150 (MQ=255) cacaCCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTCCGCACCAACCC‑‑GGCGTGAAGGGCTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAg < 2:42807‑M2/150‑2 (MQ=255) acacCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGCACTACGT‑CGAGCCCAAGTCG‑CAAGAGGTCGCCCAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAgc > 2:61298‑M2/1‑148 (MQ=255) acacCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAgc > 1:1353549‑M2/1‑148 (MQ=255) aaTTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACg > 1:478000/1‑150 (MQ=255) cgccgTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAgc < 2:1589972‑M2/137‑3 (MQ=255) cgccgTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAgc > 1:1589972‑M2/1‑135 (MQ=255) tGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGCTCGTCCAGGTTGACGctggcgttacgcgcttggc > 2:426736‑M2/1‑131 (MQ=255) gggCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGTCGCCAGCaa < 1:1385362/150‑1 (MQ=255) tCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGaa < 1:843719/150‑1 (MQ=255) ggTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCaa < 1:140200/150‑1 (MQ=255) gATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAg < 2:1237962/133‑1 (MQ=255) gATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAg > 1:1237962/1‑133 (MQ=255) tGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTgg > 2:1285881/1‑150 (MQ=255) aaGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAg > 1:1234408/1‑150 (MQ=255) gtgACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAgg > 2:289570/1‑122 (MQ=255) gtgACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAgg < 1:289570/122‑1 (MQ=255) tgACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTCCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGc < 1:116794/150‑1 (MQ=255) ccGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGAc < 2:733563/131‑1 (MQ=255) ccGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGAc > 1:733563/1‑131 (MQ=255) gtgCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGACACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑Gtt < 2:432111/150‑1 (MQ=255) tgCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAGCCTGGACGAGCTGGACGTTGCCGCCAGCAAGGACACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTg > 1:1478636/1‑150 (MQ=255) cacaAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTgcc > 2:245903/1‑150 (MQ=255) caAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTgccgc > 1:1468472/1‑150 (MQ=255) aaGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGAc < 1:914860/108‑1 (MQ=255) aaGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGAc > 2:914860/1‑108 (MQ=255) aaCTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGaa > 2:1164471/1‑150 (MQ=255) cGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGc < 1:1285881/150‑1 (MQ=255) t‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGc > 2:1443773/1‑148 (MQ=255) t‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGc < 1:1443773/148‑1 (MQ=255) gCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTgccg > 2:926545/1‑150 (MQ=255) ccAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCaa > 2:581206/1‑83 (MQ=255) ccAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCaa < 1:581206/83‑1 (MQ=255) cAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGt < 1:710082/102‑1 (MQ=255) cAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGt > 2:710082/1‑102 (MQ=255) cAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTc < 2:333621/108‑1 (MQ=255) cAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTc > 1:333621/1‑108 (MQ=255) aaGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTGCCGCCCg < 1:1153888/150‑1 (MQ=255) cGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTGCCGCCCGGTCACCGTCa < 2:365328/150‑1 (MQ=255) gTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGaa < 2:1414968/63‑1 (MQ=255) gTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGaa > 1:1414968/1‑63 (MQ=255) cAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAg < 1:906195/65‑1 (MQ=255) cAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAg > 2:906195/1‑65 (MQ=255) cAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTGCCGCCCGGTCACCGTCAGCCTGaa > 1:1127863/1‑150 (MQ=255) cAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTGCCGCCCGGTCACCGTCAGCCTGaa > 1:565049/1‑150 (MQ=255) gcgcGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTGCCGCCCGGTCACCGTCAGCCTGAAATc < 1:1101034/150‑1 (MQ=255) gTAACGCCACC‑CGTCAACCTCGACGAGCTGGACGTAGCCGCCAGCAAGAAAACCCAAGGTTTCGACCTGGACTCGTTGCAGTCGCTGCCGAGCCA‑ACAGGCTCCCTTCGACTCCCCCTGCCGCCCACTCACCGTCAGCCTGAAATCGCaa > 2:458290/1‑150 (MQ=255) tAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTGCCGCCCGGTCACCGTCAGCCTGAAATCGCaaa < 2:1188302/150‑1 (MQ=255) gCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTGCCGCCCGGTCACCGTCAGCCTGaa < 2:455336/138‑1 (MQ=255) gCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTGCCGCCCGGTCACCGTCAGCCTGaa > 1:455336/1‑138 (MQ=255) ccAGC‑CGTCAACCTGGACGAgctggcgttacgcgcttggcgaccgcttgcgccttgggctcgacgtagttcttgtgcacatagcccacggt > 2:1358561‑M2/1‑20 (MQ=255) ccAGC‑CGTCAACCTGGACGAgctggcgttacgcgcttggcgaccgcttgcgccttgggctcgacgtagttcttgtgcacatagcccacggt < 1:1358561‑M2/91‑72 (MQ=255) cAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGc > 2:1318718/1‑109 (MQ=255) cAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGc < 1:1318718/109‑1 (MQ=255) aGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTGCCGCCCGGTCACCGTCAGCCTGAAATCGCAAAGCGGCCa > 2:34773/1‑150 (MQ=255) gTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTGCCGCCCGGTCACCGTCAGCCTGAAATCGCAAAGCGGCCAGAcc > 1:622586/1‑150 (MQ=255) aaCCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTGCCGCCCGGTCACCGTCAGCCTGAAATCGCAAAGCGGCCAGACCGaa < 2:1099210/150‑1 (MQ=255) aaCCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTGCCGCCCGGTCACCGTCAGCCTGAAATCGCAAAGCGGCCAGACCGaa > 1:268602/1‑150 (MQ=255) tGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTGCCGCCCGGTCACCGTCAGCCTGAAATCGCAAAGCGGCCAGACCGAACAag > 2:1367910/1‑150 (MQ=255) gACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTGCCGCCCGGTCACCGTCAGCCTGAAATCGCAAAGCGGCCAGACCGAACAagag < 2:1468472/150‑1 (MQ=255) aGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTGCCGCCCGGTCACCGTCAGCCTGAAATCGCAAAGCGGCCAGACCGAACAAGAGCAGa < 2:1500449/150‑1 (MQ=255) | CCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGT‑CGAGCCCAAGGCG‑CAAGCGGTCGCCAAGCGCGTAACGCCAGC‑CGTCAACCTGGACGAGCTGGACGTTGCCGCCAGCAAGGAAACCCAAGGTTTCGACCTGGACTCGGTGCAGTCGCTGCCGACCCAGACA‑GTTGCCGCCGAAGCGGCCTGCCGCCCGGTCACCGTCAGCCTGAAATCGCAAAGCGGCCAGACCGAACAAGAGCAGA > NC_002947/1421076‑1421374 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |