New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2579690 | 51 (0.850) | 4 (0.070) | 4/234 | NT | 7.5% | coding (1057/1095 nt) | PP_2260 | glycerol‑phosphate ABC transporter ATP‑binding protein |
? | NC_002947 | = 2579709 | 49 (0.840) | coding (1076/1095 nt) | PP_2260 | glycerol‑phosphate ABC transporter ATP‑binding protein |
ATGTGCGCAACGAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGAACATGTGTGGGAACAGGGCGGTGCCTATGCGTTGCTCGGGCCGTC > NC_002947/2579562‑2579858 | acgtgcgCAACGAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGcc < 2:906856‑M2/148‑3 (MQ=255) gtgCGCAACGAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAg < 1:794478/150‑1 (MQ=255) gcAACGAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCga < 1:1066202/150‑1 (MQ=255) aTACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAgg < 1:654583/150‑1 (MQ=255) ggCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGAt < 1:358513/150‑1 (MQ=255) gcatcttgctgcACCTTCCCGGGGTTCACGAGTACCAGGTCGATACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCACGCCCCGGGGC‑TGCGCCAGGCGAGTAGAGGGTGATGGc < 2:156969/144‑1 (MQ=255) ctgcACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGTTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATcc < 1:1461613/150‑1 (MQ=255) ctgcACCTTCCCGGGGTTCACGAGTACCAGCTGGACACGCCGATACGCGTGCTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCTCCAGGCGAGGAGAGGGTGATGGCCGAAATcc > 2:114740/1‑150 (MQ=255) cGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAgg < 2:103893/123‑1 (MQ=255) cGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAgg > 1:103893/1‑123 (MQ=255) ttCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGaaa < 2:1223044/131‑1 (MQ=255) ttCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGaaa > 1:1223044/1‑131 (MQ=255) gAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGG‑CCCGGGGC‑TGCGCCAGGCGAGGagag < 2:329607/111‑1 (MQ=255) gAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGG‑CCCGGGGC‑TGCGCCAGGCGAGGagag > 1:329607/1‑111 (MQ=255) tACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGtt > 2:1308939/1‑150 (MQ=255) ggTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGcc > 1:726172/1‑114 (MQ=255) ggTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGcc < 2:726172/114‑1 (MQ=255) ggTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAgc < 1:1420463/150‑1 (MQ=255) gTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAgcc > 2:134661/1‑150 (MQ=255) gCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGccgccagccc > 1:901827/1‑150 (MQ=255) gcgTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGa > 2:584593/1‑150 (MQ=255) gcgTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGa > 1:675480/1‑150 (MQ=255) gcgTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGCGCAG‑CCCCGGGGCCTGCAccaacagcccggcgctgtcgaaaa < 1:932346‑M2/97‑25 (MQ=255) gcgTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGCGCAG‑CCCCGGGGCCTGCAccaacagcccggcgctgtcgaaaa > 2:932346‑M2/1‑73 (MQ=255) cgTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAg < 2:737995/150‑1 (MQ=255) gtTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCa < 1:1615443/150‑1 (MQ=255) gtTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCa > 1:1522459/1‑150 (MQ=255) ttCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAg > 1:24356/1‑150 (MQ=255) tCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGa < 1:584593/150‑1 (MQ=255) aTCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAggg < 2:387286/81‑1 (MQ=255) aTCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAggg > 1:387286/1‑81 (MQ=255) cccACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCGGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCCCCAGCCCGCCAGCGAGGCAGACTATg > 2:304438/1‑150 (MQ=255) cGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCt < 2:1315819/150‑1 (MQ=255) cacaAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTgc < 1:1308939/150‑1 (MQ=255) acaAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACa < 2:641391/113‑1 (MQ=255) acaAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACa > 1:641391/1‑113 (MQ=255) acaAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGCGCAG‑CCCCGGGGCCTGCAccaacagcccgg < 1:827363‑M2/67‑13 (MQ=255) acaAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGCGCAG‑CCCCGGGGCCTGCAccaacagcccgg > 2:827363‑M2/1‑55 (MQ=255) caAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTgcac > 1:119762/1‑150 (MQ=255) aaGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTgcacg > 1:871996/1‑150 (MQ=255) ttCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCg > 2:980704/1‑150 (MQ=255) gTTTTCGACAGCGACGGGCTGTTGGTGCAGGCCCCGGGGG‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGAATGCGCCAGCTGGCGCACAGTTACAGCAGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCAAGCACTCGAAc > 2:478972/1‑150 (MQ=255) tttCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGAACAt < 2:119762/150‑1 (MQ=255) gACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACa < 1:952365/96‑1 (MQ=255) gACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCATGCGCCAGCTGGCGCACAGTTACa > 2:952365/1‑96 (MQ=255) aCAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGAACAtgtgtg > 1:59736/1‑150 (MQ=255) cAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGAACATGTGTgg < 2:675480/150‑1 (MQ=255) aGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGcag > 2:74575/1‑85 (MQ=255) aGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGcag < 1:74575/86‑2 (MQ=255) ggCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGcaggcg < 1:46457/82‑5 (MQ=255) ggCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGcaggcg > 2:46457/1‑78 (MQ=255) tGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGAACATGTGTGGGAACAGGGCGGTGc < 1:906856/150‑1 (MQ=255) gCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGAACATGTGTGGGAACAGGGCGGTGCCTAt < 2:1522459/150‑1 (MQ=255) ggCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGAACATGTGTGGGAACAGGGCGGTGCCTATGCg < 1:1125435/150‑1 (MQ=255) gCCCCGGGGC‑TGCGCCAGGCGAGGCGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGGTACAGCCGGCAGCCCACCAGCTAGGCGGACTATGCCCTGCAAGCACTCGAACATGTGTGGGAACAGGGCGGTGCATATGCGt > 2:546226/1‑150 (MQ=255) ccGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGAACATGTGTGGGAACAGGGCGGTGCCTATGCGTTGc > 2:1645706/1‑150 (MQ=255) c‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGAACATGTGTGGGAACAGGGCGGTGCCTATGCGTTGCTCGGGc < 1:980704/150‑1 (MQ=255) gcCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGAACATGTGTGGGAACAGGGCGGTGCCTAt < 2:564186/133‑1 (MQ=255) gcCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGAACATGTGTGGGAACAGGGCGGTGCCTAt > 1:564186/1‑133 (MQ=255) gcCAGGCCATGAGAGGGTGATGGCCAAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCCCTCGAACATGTGTGGGAACAGGGCGGTGCCTATGCGTTGCTCGGGCCGTc < 1:478972/150‑1 (MQ=255) | ATGTGCGCAACGAATACTGGCGCATGGTGCTGCACCTTCCCGGGGTTCACGAGTACCAGGTGGACACGCCGATACGCGTGTTCATCCCCACGCACAAGCTGTTCGTTTTCGACAGCGCCGGGCTGTTGGTGCAGGCCCCGGGGC‑TGCGCCAGGCGAGGAGAGGGTGATGGCCGAAATCCGCCTGCGCCAGCTGGCGCACAGTTACAGCCGCCAGCCCGCCAGCGAGGCAGACTATGCCCTGCACGCACTCGAACATGTGTGGGAACAGGGCGGTGCCTATGCGTTGCTCGGGCCGTC > NC_002947/2579562‑2579858 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |