New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 435299244 (0.730)4 (0.070) 4/226 NT 8.0% coding (74/1086 nt) yrpB 2‑nitropropane dioxygenase
?NC_002947 = 4353008 51 (0.900)coding (90/1086 nt) yrpB 2‑nitropropane dioxygenase

GCCCTGTAAGACTCGCCGCAAGCCCCCGCCGCAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGCTGAACCTGAACTTCTTCTGCCACCA  >  NC_002947/4352859‑4353154
                                                                                                                                                     |                                                                                                                                                  
gCCCTGTAAGACTCGCCGCAAGCCCCCGCCGCAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCg                                                                                                                                                    <  2:1410923/150‑1 (MQ=255)
  ccTGTAAGACTCGCCGCAAGCCCCCGCCGCAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGgc                                                                                                                                                  <  2:1166911‑M2/150‑3 (MQ=255)
      aaacaatcgccgcTAGCCCCCGCCGCAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTTGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGgccatg                                                                                                                                              >  1:23254‑M2/7‑144 (MQ=255)
                 gcAGGCCCCCGCCGTAGCGGTGACAACTCGCATGGAGAACAAGATGATACCTTGGCTCCATCGCCGTATCCGCAACCTGCTGGGCATCGAGCTGCACATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCtgt                                                                                                                                   <  2:357048/150‑1 (MQ=255)
                       ccccGCCGCAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCca                                                                                                                             <  2:587441/150‑1 (MQ=255)
                         ccgccgCAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCcagg                                                                                                                           >  1:1509689/1‑150 (MQ=255)
                              gcAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGt                                                                                                                      <  2:921002/150‑1 (MQ=255)
                                        ccccACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGgcg                                                                                                            >  1:1268454/1‑150 (MQ=255)
                                          ccACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTATATCGGACTCTAAGTCGTGGGCGACCGGCTCGGACATGGAAATCGCTCCAGACCAGGCAGGTGGGCTGGGCgcc                                                                                                          >  1:1264905/1‑150 (MQ=255)
                                          ccACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCACCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCgcc                                                                                                          <  1:62016/150‑1 (MQ=255)
                                            aCGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCgccct                                                                                                        >  2:257420/1‑150 (MQ=255)
                                                     gaATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTgcgc                                                                                               >  2:1526121/1‑150 (MQ=255)
                                                     gaATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTgcgc                                                                                               >  1:685759/1‑150 (MQ=255)
                                                        tCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGtg                                                                                                                     >  1:1628062/1‑125 (MQ=255)
                                                        tCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGtg                                                                                                                     <  2:1628062/125‑1 (MQ=255)
                                                                   aTTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAgcggcg                                                                                 >  2:442111/1‑150 (MQ=255)
                                                                    ttGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGGTCAGCGGCGa                                                                                >  1:68975/1‑150 (MQ=255)
                                                                       gCCCGACCGCCGTATCCTCAACCTGCTGGGCATGGAGCTGCCCATGCTGCAGGCACCCATGGCGTGGGCGACCGCTTCGGCCATGGCCATCGCTGTGGGCCAAGCAGGTGAGCTAGGAGCCCTGCCCTGCGCCATGCTCAGCGGCGAACa                                                                             >  1:106384/1‑150 (MQ=255)
                                                                       gCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACa                                                                             <  2:670657/150‑1 (MQ=255)
                                                                        cccGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAg                                                                            <  2:1264905/150‑1 (MQ=255)
                                                                          cGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGt                                                                                                                      <  1:505780/106‑1 (MQ=255)
                                                                          cGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGt                                                                                                                      >  2:505780/1‑106 (MQ=255)
                                                                            aCCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTgc                                                                        >  1:494098/1‑150 (MQ=255)
                                                                                   tATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGTTGCGCGCCga                                                                 <  1:1526121/150‑1 (MQ=255)
                                                                                   tATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCga                                                                 <  1:1383137/150‑1 (MQ=255)
                                                                                        tCAACCTGCTGGGCATCGAGCTGTCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGccacctcat                                                            >  2:1187159/1‑143 (MQ=255)
                                                                                        tCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCg                                                            >  1:1327365/1‑150 (MQ=255)
                                                                                               gctgGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCAtt                                                     <  1:257420/150‑1 (MQ=255)
                                                                                                         gAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGTGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCCCGCCGAGATCGCTGCATTCCGCGCCGGc                                           >  2:385310/1‑150 (MQ=255)
                                                                                                            cTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGc                                        >  2:471480/1‑150 (MQ=255)
                                                                                                               cccATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGccctgccctg                                                                                                  >  1:1166828/1‑89 (MQ=255)
                                                                                                               cccATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGccctgccctg                                                                                                  <  2:1166828/89‑1 (MQ=255)
                                                                                                               cccATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGccaagc                                                               >  1:1582114/1‑120 (MQ=255)
                                                                                                               cccATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCaagc                                                               <  2:1582114/124‑2 (MQ=255)
                                                                                                               cccATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCg                                     >  2:1532320/1‑150 (MQ=255)
                                                                                                               cccATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCg                                     >  1:133739/1‑150 (MQ=255)
                                                                                                                ccATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCAGGGCCATCACTGTGGACCAGGCAGGTGGGCTTTGCTCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCgg                                    >  1:610203/1‑150 (MQ=255)
                                                                                                                 cATTCTGCAGGCACCCATGTCGGCGGCGACCGGCTCGTCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCGTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCggg                                   <  1:467212/150‑1 (MQ=255)
                                                                                                                 cATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCggg                                   <  2:494098/150‑1 (MQ=255)
                                                                                                                 cATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCggg                                   >  2:1610364/1‑150 (MQ=255)
                                                                                                                  aTTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGAGCGTTGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCgggg                                  >  2:144700/1‑150 (MQ=255)
                                                                                                                       gCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGccc                             <  1:442111/150‑1 (MQ=255)
                                                                                                                         aGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTTAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGc                           >  2:108571/1‑150 (MQ=255)
                                                                                                                         aGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGc                           >  2:36969/1‑150 (MQ=255)
                                                                                                                          ggCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGct                          >  1:785187/1‑150 (MQ=255)
                                                                                                                             aCCCATGGCGGGGGCGACCGGCTCGgccatgggtgcctgcagaatgggcagctcgatgcccagcaggttgaggatacggcggtcgggccaatggctcatgcgattctccttgcgt                                                          <  2:1474557‑M2/115‑91 (MQ=255)
                                                                                                                             aCCCATGGCGGGGGCGACCGGCTCGgccatgggtgcctgcagaatgggcagctcgatgcccagcaggttgaggatacggcggtcgggccaatggctcatgcgattctccttgcgt                                                          >  1:1474557‑M2/1‑25 (MQ=255)
                                                                                                                               ccATGGCGGGGGCGACCGGCTCGgccatgggtgcctgcagaatgggcagctcgatgcccagcaggttgaggatacggcggtcgggc                                                                                     >  2:1625034‑M2/1‑23 (MQ=255)
                                                                                                                               ccATGGCGGGGGCGACCGGCTCGgccatgggtgcctgcagaatgggcagctcgatgcccagcaggttgaggatacggcggtcgggc                                                                                     <  1:1625034‑M2/86‑64 (MQ=255)
                                                                                                                               ccATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGctgaacc                     >  1:1592557/1‑150 (MQ=255)
                                                                                                                                    gCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGctgaacctgagc                <  1:471480/150‑3 (MQ=255)
                                                                                                                                    gCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGctgaacctgaac                >  1:1268746/1‑150 (MQ=255)
                                                                                                                                    gCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGctgaacctgaac                <  2:785187/150‑1 (MQ=255)
                                                                                                                                          gCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGCTATCTTCATTCCGCGCCGGCTGCCCGGGGCGCCCGCTGAACCTGAACttcttc          <  1:1275034/150‑1 (MQ=255)
                                                                                                                                          gCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGCTGAACCTGAActtct            >  1:591848/1‑148 (MQ=255)
                                                                                                                                          gCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGCTGAACCTGAActtct            <  2:591848/148‑1 (MQ=255)
                                                                                                                                          gCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGCTGAACCTGAACttcttc          <  2:68975/150‑1 (MQ=255)
                                                                                                                                              ccGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCAGCGCCGGCTGCCCGGGGCGCCCGCTGAACCTGAACTTCTTCTGcc      <  1:1503823/150‑1 (MQ=255)
                                                                                                                                                  cTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGCTGAACCTGAACTTCTTCTGccacca  <  1:1610364/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                  
GCCCTGTAAGACTCGCCGCAAGCCCCCGCCGCAGCGCTCGCCCCACGCAAGGAGAATCGCATGAGCCATTGGCCCGACCGCCGTATCCTCAACCTGCTGGGCATCGAGCTGCCCATTCTGCAGGCACCCATGGCGGGGGCGACCGGCTCGGCCATGGCCATCGCTGTGGGCCAGGCAGGTGGGCTGGGCGCCCTGCCCTGCGCCATGCTCAGCGGCGAACAGGTGCGCGCCGAGATCGCTGCATTCCGCGCCGGCTGCCCGGGGCGCCCGCTGAACCTGAACTTCTTCTGCCACCA  >  NC_002947/4352859‑4353154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.