New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5222952 =	0 (0.000)	12 (0.210) +TGAT	12/232	NT	100%	intergenic (‑315/+64)	PP_4602/PP_4603	AraC family transcriptional regulator/transposase
	?	NC_002947	5545128 =	NA (NA)					intergenic (‑220/+657)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB

TTGCACGGAGGGGAGGCACATGAGCGCCTGCCAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAG  >  NC_002947/5544979‑5545260                                                                                                                                                      |                                                                                                                                     ttGCACGGAGGGGAGGCACATGAGCGCCTGCCAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGc                                                                                                                                      >  1:842663/1‑150 (MQ=255) ttGCACGGAGGGGAGGCACATGAGCGCCTGCCAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAAAGAGTGTGCTGTCAGGTGCATATTTACAGGCTGCGGGCTCTTTCGCGGGTGAACCCGc                                                                                                                                      >  2:42139/1‑150 (MQ=255)           gggaggCACATGAGCGCCTGCCAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATcaaa                                                                                                                            <  2:1451595/150‑1 (MQ=255)                gCACATGAGCGCCTGCCAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACaaaa                                                                                                                       >  1:939668/1‑150 (MQ=255)                  acaTGAGCGCCTGCCAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATg                                                                                                                     >  1:484651/1‑150 (MQ=255)                     tGAGCGCCTGCCAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCaa                                                                                                                  <  1:287927/150‑1 (MQ=255)                      gAGCGCCTGCCAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGCATAGTCTTACGGCGTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAAc                                                                                                                 >  1:1018774/1‑150 (MQ=38)                        gcgcCTGCCAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAAccc                                                                                                               >  2:683843/1‑150 (MQ=255)                            cTGCCAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTg                                                                                                           >  1:1055445/1‑150 (MQ=255)                            cTGCCAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTg                                                                                                           >  1:1055388/1‑150 (MQ=255)                            cTGCCAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAACAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTg                                                                                                           >  1:1115118/1‑150 (MQ=255)                               ccAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACaaaa                                                                                                                       <  1:1004044/135‑1 (MQ=255)                               ccAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACaaaa                                                                                                                       >  2:1004044/1‑135 (MQ=255)                                cAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGtttt                                                                                                       <  1:1543858/150‑1 (MQ=255)                                 aGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCaa                                                                                                                  >  1:1443553/1‑138 (MQ=255)                                 aGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCaa                                                                                                                  <  2:1443553/138‑1 (MQ=255)                                 aGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTc                                                                                                      >  1:910303/1‑150 (MQ=255)                                         aaGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACt                                                                                              >  2:839708/1‑150 (MQ=255)                                             ggCGCAATTGTCGAGAAGCCGGGGCGCACAAGCAAGGTGATGGGGGAGTAGTTGAACAGCCTGAAACATATTTACAGGCTGCGGGGCCATCAGCCCCGGACCCCTCCCGGGTCAACCAACACCCAACCCATTTTGTTCTAAGCACTCAAg                                                                                          >  2:358566/1‑150 (MQ=255)                                                        agagAAGCCGGGGCGCACAAACAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGt                                                                               <  2:1115118/150‑1 (MQ=255)                                                          agaAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCTCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTg                                                                             >  1:246859/1‑150 (MQ=255)                                                           gaAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGa                                                                            <  1:683843/150‑1 (MQ=255)                                                                  gggCGCACAAGCAAGGTGATTGGTGAATATTTGAACCGGCCGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCa                                                                     <  1:1251410/150‑1 (MQ=255)                                                                           agcaagGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCggg                                                            <  2:873806/150‑1 (MQ=255)                                                                              aagGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCtt                                                         >  1:12786/1‑150 (MQ=255)                                                                              aagGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCtt                                                         >  2:438693/1‑150 (MQ=255)                                                                               agGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCttt                                                        <  1:438693/150‑1 (MQ=255)                                                                                ggTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTg                                                       <  1:839708/150‑1 (MQ=255)                                                                                   gATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGa                                                    >  1:894584/1‑150 (MQ=255)                                                                                          gAATACTTGAACAGCCTGAAACATATTTACAGGATGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCACGCGGCCCCCCGTTGCTACCCCAGTTTCCGGGCCTTTCCAAGCAAAg                                             <  2:1334817/150‑1 (MQ=17)                                                                                           aaTATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTcc                                                               >  1:28308/1‑131 (MQ=255)                                                                                           aaTATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTcc                                                               <  2:28308/131‑1 (MQ=255)                                                                                             tatTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCTTCGCAAAGccc                                          <  1:358566/150‑1 (MQ=255)                                                                                                   aaCAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCt                                    >  1:1292978/1‑150 (MQ=255)                                                                                                        ccTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCaa                                                                                                                  >  2:102479/1‑67 (MQ=255)                                                                                                        ccTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCaa                                                                                                                  <  1:102479/67‑1 (MQ=255)                                                                                                            aaaCATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCg                                <  1:1194347/145‑1 (MQ=255)                                                                                                            aaaCATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCg                                >  2:1194347/1‑145 (MQ=255)                                                                                                            aaaCATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCtt                           <  2:1018774/150‑1 (MQ=255)                                                                                                            aaaCATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCtt                           >  1:318503/1‑150 (MQ=255)                                                                                                                atatTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGGCTtggct                       >  2:617969/1‑150 (MQ=255)                                                                                                                          gCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCg             >  1:546354/1‑150 (MQ=38)                                                                                                                          gCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCg             >  2:1000207/1‑150 (MQ=38)                                                                                                                            tGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGaa           >  2:62396/1‑150 (MQ=34)                                                                                                                                  cccTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAActcctc     <  2:1055445/150‑1 (MQ=32)                                                                                                                                  cccTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAActcctc     <  2:1055388/150‑1 (MQ=32)                                                                                                                                   ccTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCa    >  1:555175/1‑150 (MQ=32)                                                                                                                                    cTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGaa           <  2:580126/142‑1 (MQ=31)                                                                                                                                    cTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGaa           >  1:580126/1‑142 (MQ=31)                                                                                                                                     tttCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAg  >  1:1363507/1‑150 (MQ=11)                                                                                                                                                      |                                                                                                                                     TTGCACGGAGGGGAGGCACATGAGCGCCTGCCAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAG  >  NC_002947/5544979‑5545260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.