Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,882,233 | G→C | 7.0% | L246L (CTG→CTC) | serA → | bifunctional D‑3‑phosphoglycerate dehydrogenase/alpha‑ketoglutarate reductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,882,233 | 0 | G | C | 7.0% | 175.9 / 4.1 | 57 | L246L (CTG→CTC) | serA | bifunctional D‑3‑phosphoglycerate dehydrogenase/alpha‑ketoglutarate reductase |
Reads supporting (aligned to +/- strand): ref base G (28/25); new base C (2/2); total (30/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.36e-01 |
CTGAACGAGCTGCTGGGCCTGGCTGACATCGTCTCGCTGCACGTGCCTGAGCTGCCATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGAAGAGTTCGAGAGCCCGCTGCGCGGCCTCGACAACGTGATCCTGACGCCGCACATTGGT > NC_002947/5882084‑5882377 | cTGAACGAGCTGCTGGGCCTGGCCGACATCGTCTCGCTGCACGTGCCTGAGCTGCCATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTg < 2:610518/150‑1 (MQ=255) tGAACGAGCTGCTGGGCCTGGCTGACATCGTCTCGCTGCACGTGCCTGAGCTGCCATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTgg < 1:926310/150‑1 (MQ=255) tgctgGGCCTGGCTGACATCGTCTCGCTGCACGTGCCTGAGCTGCCATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTgg > 2:217986/1‑150 (MQ=255) gggCCTGGCTGACATCGTCTCGCTGCACGTGCCTGAGCTGCCATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGc < 1:217986/150‑1 (MQ=255) ccTGGCTGACATCGTCTCGCTGCACGTGCCTGAGCTGCCATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGc < 1:1102111/150‑1 (MQ=255) tGACATCGTCTCGCTGCACGTGCCTGAGCTGCCATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCaa < 2:1030914/150‑1 (MQ=255) tGACATCGTCTCGCTGCACGTGCCTGAGCTGCCATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCaa > 2:1519935/1‑150 (MQ=255) tctcGCTGCACGTGCCTGAGCTGCCATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGc > 1:635876/1‑150 (MQ=255) tcGCTGCACGTGCCTGAGCTGCCATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCAc < 1:1535838/150‑1 (MQ=255) tcGCTGCACGTGCCTGAGCTGCCATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCAc < 2:635876/150‑1 (MQ=255) cACGTGCCTGAGCTGCCATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATc < 2:795940/150‑1 (MQ=255) cACGTGCCTGAGCTGCCATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATc < 2:690452/150‑1 (MQ=255) cTGCCATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCCAGCTCGaccacg > 1:1307131/1‑105 (MQ=255) cTGCCATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCCAGCTCGaccacg < 2:1307131/106‑2 (MQ=255) ccATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTgg < 2:1461949/106‑1 (MQ=255) ccATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTgg > 1:1461949/1‑106 (MQ=255) ccATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGTCGCCGCCATCGAc > 2:576020/1‑150 (MQ=255) aTCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACgt > 2:1259020/1‑150 (MQ=255) aCCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGaccac > 2:1087389/1‑96 (MQ=255) aCCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGaccac < 1:1087389/96‑1 (MQ=255) aCCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTc > 1:687422/1‑150 (MQ=255) cccAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCTCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTcc < 1:841747/150‑1 (MQ=255) cccAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGTCGCCGCCATCGACGTGTTcc < 1:576020/150‑1 (MQ=255) cccAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTcc < 2:88215/150‑1 (MQ=255) tGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTc > 2:199204/1‑150 (MQ=255) gatgatCGGCGAGAAGGAAATCCGCTCGATGCAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCgg < 2:793446/146‑1 (MQ=255) gatgatCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCgg > 1:793446/1‑146 (MQ=255) tgatCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGc > 1:1369700/1‑150 (MQ=255) ggCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGc < 1:894457/150‑1 (MQ=255) gagaAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTcc > 2:133690/1‑150 (MQ=255) aaGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACgt > 1:1223144/1‑125 (MQ=255) aaGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACgt < 2:1223144/125‑1 (MQ=255) tCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGAc > 1:30905/1‑116 (MQ=255) tCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGAc < 2:30905/116‑1 (MQ=255) cGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGAagag > 2:896076/1‑150 (MQ=255) cGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCCAGCTCGaccacgg > 2:1131321/1‑66 (MQ=38) cGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCCAGCTCGaccacgg < 1:1131321/68‑3 (MQ=38) gCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGAAGAGt > 1:1116281/1‑150 (MQ=255) gATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGaa < 2:839049/142‑1 (MQ=255) gATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGaa > 1:839049/1‑142 (MQ=255) tGAAGAAGGGCGCGATCCTTATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGAAGAGTTCgaga > 1:1622221/1‑150 (MQ=255) tGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGAAGAGTTCgaga > 1:879414/1‑150 (MQ=255) tGAAGAAGGGCGCGATCCTGATCAACGACGCCAGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGAAGAGTTCgaga > 2:1252539/1‑150 (MQ=255) ggCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGAAGAGTTCGAGAGCCCGCTg > 2:441341/1‑150 (MQ=255) cgATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGAAGAGTTCGAGAGCCCGCTGcgcg < 2:687422/150‑1 (MQ=255) gATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGAAGAGTTCGAGAGCCCGCTGCGCgg > 1:64631/1‑150 (MQ=255) tGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGAc < 1:1599209/89‑1 (MQ=255) tGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGAc > 2:1599209/1‑89 (MQ=255) gATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCaa < 2:315984/57‑1 (MQ=255) gATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCaa > 1:315984/1‑57 (MQ=255) gATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTc < 2:1304862/111‑1 (MQ=255) gATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTc > 1:1304862/1‑111 (MQ=255) cgccCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGAAGAGTTCGAGAGCCCGCTGCGCGGCCTCGACAACGTGAt > 2:1108670/1‑150 (MQ=255) gCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGAAGAGTTCGAGAGCCCGCTGCGCGGCCTCGACAACGTGATCCTGAcgc > 1:1614394/1‑150 (MQ=255) cACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGAAGAGTTCGAGAGCCCGCTGCGCGGCCTCGACAACGTGATCCTGAcgcc < 1:133690/150‑1 (MQ=255) aCCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGAAGAGTTCGAGAGCCCGCTgcgc > 2:1355649/1‑123 (MQ=255) aCCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGGGTTCCCGGTCGAGCCACGCTCCAACGACGAAGAGTTCGAGAGCCCGCTgcgc < 1:1355649/123‑1 (MQ=255) cGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGAAGAGTTCGAGAGCCCGCTGCGCGGCCTCGACAACGTGATCCTGACGCCGCACATtgg < 1:1108670/150‑1 (MQ=255) gAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGAAGAGTTCGAGAGCCCGCTGCGCGGCCTCGACAACGTGATCCTGACGCCGCACATtggt < 2:1614394/150‑1 (MQ=255) | CTGAACGAGCTGCTGGGCCTGGCTGACATCGTCTCGCTGCACGTGCCTGAGCTGCCATCCACCCAGTGGATGATCGGCGAGAAGGAAATCCGCTCGATGAAGAAGGGCGCGATCCTGATCAACGCCGCCCGTGGCACCGTGGTCGAGCTGGACCACCTGGCCGCTGCCATCAAGGACAAGCACCTGATCGGCGCCGCCATCGACGTGTTCCCGGTCGAGCCACGCTCCAACGACGAAGAGTTCGAGAGCCCGCTGCGCGGCCTCGACAACGTGATCCTGACGCCGCACATTGGT > NC_002947/5882084‑5882377 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |