Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 6,129,216 A→C 7.8% intergenic (+22/+45) PP_5376 → / ← PP_5377 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029476,129,2160AC 7.8% 246.4 / 11.2 90intergenic (+22/+45)PP_5376/PP_5377hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (45/37);  new base C (3/4);  total (49/41)
Fisher's exact test for biased strand distribution p-value = 6.99e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.53e-01

TGTGACCTCGACCCGGGGAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGC  >  NC_002947/6129071‑6129364
                                                                                                                                                 |                                                                                                                                                    
tgtgACCTCGACCCGGGGAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAAc                                                                                                                                                  <  1:963507/150‑1 (MQ=255)
   gACCTCGACCCGGGGAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGgc                                                                                                                                               <  1:528730/150‑1 (MQ=255)
     ccTCGACCCGGGGAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGgcgc                                                                                                                                             >  2:1024178/1‑150 (MQ=255)
               nggAAGCTGTGACGTGATGCCTGCGCAANTGACCTATNAAGACTAGANAGGCAAGCTCAAAATTCTCGAATACGGCGAAGGTGGGGTCAAGCGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCCAGAGGAAACGGCGCGTTtaaggag                                                                                                                                   >  1:707803/2‑146 (MQ=255)
                 gAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGcc                                                                                                                                 <  2:139836/150‑1 (MQ=255)
                      tgtgACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCTTTTAAGGCGCCGtttt                                                                                                                            >  2:1340815/1‑149 (MQ=255)
                       gtgACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGc                                                                                                                           <  1:1024178/150‑1 (MQ=255)
                       gtgACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGc                                                                                                                           >  1:954698/1‑150 (MQ=255)
                          aCGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGtt                                                                                                                        >  1:967872/1‑150 (MQ=255)
                          aCGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCAGGGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGtt                                                                                                                        >  1:514547/1‑150 (MQ=255)
                           cGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCTTTTAAGGCGCCGTTTTCGttt                                                                                                                       <  1:1340815/150‑2 (MQ=255)
                            gTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTgg                                                                                                                      >  2:1237853/1‑150 (MQ=255)
                                tcccTGCGAACCTGACCTATTACTACTCGCCAGGCAAGCTCAACATTCCCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCATAATTGAGCTCTGAATGCCGTCCCAACGCAAACGGCGCTTTTAAGGCGCCGTTTTCGTTTGGaca                                                                                                                  <  2:707803/148‑3 (MQ=21)
                                         aaaTGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGt                                                                                                         >  2:1567532/1‑150 (MQ=255)
                                              aCCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTg                                                                                                    >  1:990248/1‑150 (MQ=255)
                                                cTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGc                                                                                                  >  1:611239/1‑150 (MQ=255)
                                                  aTGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCt                                                                                                <  1:1237853/150‑1 (MQ=255)
                                                    gAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGgc                                                                                                                                               >  2:536652/1‑101 (MQ=255)
                                                    gAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGgc                                                                                                                                               <  1:536652/101‑1 (MQ=255)
                                                     aaGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAACCGAAAACGGCGCCTTAACAGCGCCGTGTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGa                                                                                             >  2:387167/1‑150 (MQ=255)
                                                          tCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATActc                                                                                        >  2:1555951/1‑150 (MQ=255)
                                                           cGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGTGAAAACGGTGGGTCAGTGGCCTGGATActct                                                                                       <  2:988047/150‑1 (MQ=255)
                                                           cGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATActct                                                                                       <  2:611239/150‑1 (MQ=255)
                                                            gACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGt                                                                                                         >  1:1474293/1‑131 (MQ=255)
                                                            gACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGt                                                                                                         <  2:1474293/131‑1 (MQ=255)
                                                            gACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGAGTGGGGAACACGGTGGGTCAGTGGCCTGGATACTCTg                                                                                      <  1:387167/150‑1 (MQ=255)
                                                              cAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCt                                                                                                >  1:517469/1‑138 (MQ=255)
                                                              cAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCt                                                                                                <  2:517469/138‑1 (MQ=255)
                                                              cAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCa                                                                                    >  2:1038756/1‑150 (MQ=255)
                                                               aGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTCCCGCGGCCAAAATTGAGCTATGAATGCTGTCCAAACGAACACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCaa                                                                                   >  1:450390/1‑150 (MQ=255)
                                                                 gCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCt                                                                                                <  2:972639/135‑1 (MQ=255)
                                                                 gCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCt                                                                                                >  1:972639/1‑135 (MQ=255)
                                                                   aaGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAGAGTTCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCAc                                                                               <  1:429366/150‑1 (MQ=255)
                                                                         aaCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCTTTTAAGGCGCCGTTTTCGtt                                                                                                                        <  1:366806/103‑1 (MQ=38)
                                                                         aaCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCTTTTAAGGCGCCGTTTTCGtt                                                                                                                        >  2:366806/1‑103 (MQ=38)
                                                                         aaCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATc                                                                         >  1:231646/1‑150 (MQ=255)
                                                                           cATTCTCGAATACCGCGCGGCCGGCACCAATTGCCGCGGCCAAAATTGAGCTCGCAATGCTGTCCAAACCAAAACGGCGTCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGCGTCAGTGGCCTGGATACTCTGCAACCACTTGATccc                                                                       <  2:450390/150‑1 (MQ=255)
                                                                            aTTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTgg                                                                                                                      >  1:237365/1‑102 (MQ=255)
                                                                            aTTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTgg                                                                                                                      <  2:237365/102‑1 (MQ=255)
                                                                             ttCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAACGCAAACGGCGCTTTTAAGGCGCCGTTTTCGTTTGGacag                                                                                                                 >  1:286351/1‑102 (MQ=18)
                                                                             ttCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAACGCAAACGGCGCTTTTAAGGCGCCGTTTTCGTTTGGacag                                                                                                                 <  2:286351/105‑4 (MQ=18)
                                                                               ctcGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGGGTCGTGTATACTGTGCAACCACTTCATCACGTcc                                                                   >  2:267921/1‑150 (MQ=255)
                                                                               ctcGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGCGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTcc                                                                   >  2:1447878/1‑150 (MQ=255)
                                                                                tcGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTACAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTTCAACCACTTCATCCCGTCCg                                                                  >  1:1517179/1‑150 (MQ=255)
                                                                                tcGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTCTGCGATGGGAAAACGGTGGGTGAGTGGCCTGGAGACTCTGCAACCACTTCATCCCGTCCg                                                                  >  1:99889/1‑150 (MQ=255)
                                                                                       ccGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgt                                                           <  1:1038756/150‑1 (MQ=255)
                                                                                        cgcgCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt                                                          <  2:967872/150‑1 (MQ=255)
                                                                                        cgcgCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt                                                          >  2:891566/1‑150 (MQ=255)
                                                                                          cgcAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTga                                                        <  2:954698/150‑1 (MQ=255)
                                                                                            cAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTgaga                                                      <  2:231646/150‑1 (MQ=255)
                                                                                                  gCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAg                                                                                                      >  1:1385797/1‑96 (MQ=255)
                                                                                                  gCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAg                                                                                                      <  2:1385797/96‑1 (MQ=255)
                                                                                                  gCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATg                                                >  1:1409077/1‑150 (MQ=255)
                                                                                                   cATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGa                                               >  2:303992/1‑150 (MQ=255)
                                                                                                    aTCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGGTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGAc                                              >  1:1285161/1‑150 (MQ=255)
                                                                                                     tCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGAt                                                 <  1:1550159/146‑1 (MQ=255)
                                                                                                     tCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGAt                                                 >  2:1550159/1‑146 (MQ=255)
                                                                                                     tCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGAcc                                             <  1:891566/150‑1 (MQ=255)
                                                                                                       aaTTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGAGTCAGTGGCCTGGGTCCGCAGGAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTg                                           >  1:1186396/1‑150 (MQ=255)
                                                                                                             cgcgGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt                                                          >  2:1556562/1‑129 (MQ=255)
                                                                                                             cgcgGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt                                                          <  1:1556562/129‑1 (MQ=255)
                                                                                                               cgGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCAt                                   >  1:527659/1‑150 (MQ=255)
                                                                                                                   cAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATgaga                               >  1:768174/1‑150 (MQ=255)
                                                                                                                              tctGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt                                                          >  2:1045475/1‑112 (MQ=255)
                                                                                                                              tctGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt                                                          <  1:1045475/112‑1 (MQ=255)
                                                                                                                              tctGAATGCTGTCCAAACGAAAACGGCGCCTCAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCa                    >  2:926930/1‑150 (MQ=255)
                                                                                                                                tGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGt                                                                                                         <  2:899570/63‑1 (MQ=255)
                                                                                                                                tGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGt                                                                                                         >  1:899570/1‑63 (MQ=255)
                                                                                                                                   aTGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTcc               <  1:1555951/150‑1 (MQ=255)
                                                                                                                                    tGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACAATCCACTTCCa              <  2:990248/150‑1 (MQ=255)
                                                                                                                                     gCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCAt             >  2:1364808/1‑150 (MQ=255)
                                                                                                                                      ttttcccaaCGCAAACGGCGCTTTTAAGGCGCCGTTTTCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATa            >  1:113653/8‑150 (MQ=38)
                                                                                                                                        gTCAAAACGAAAACGGCTCCTTAACACCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATAcc          <  2:206110/150‑1 (MQ=255)
                                                                                                                                         tCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGTTCAGTGGCCTGCATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCt         >  1:206110/1‑150 (MQ=255)
                                                                                                                                         tCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCt         <  2:1451180/150‑1 (MQ=255)
                                                                                                                                          cccaaCGCAAACGGCGCTTTTAAGGCGCCGTTTTCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTg        <  2:113653/147‑1 (MQ=38)
                                                                                                                                           cAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTgg                                                                                              >  2:96624/1‑63 (MQ=255)
                                                                                                                                           cAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTgg                                                                                              <  1:96624/63‑1 (MQ=255)
                                                                                                                                           cAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCg                                                                  >  1:1609646/1‑91 (MQ=255)
                                                                                                                                           cAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCg                                                                  <  2:1609646/91‑1 (MQ=255)
                                                                                                                                           cAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgt                                                           <  2:974847/98‑1 (MQ=255)
                                                                                                                                           cAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgt                                                           >  1:974847/1‑98 (MQ=255)
                                                                                                                                            aaaCGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGga      >  1:1304427/1‑150 (MQ=255)
                                                                                                                                             aaCGCAAACGGCGCTTTTAAGGCGCCGTTTTCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGa                                                  >  2:973513/1‑105 (MQ=37)
                                                                                                                                             aaCGCAAACGGCGCTTTTAAGGCGCCGTTTTCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGa                                                  <  1:973513/105‑1 (MQ=37)
                                                                                                                                             aaCGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTgg                                          >  1:626599/1‑113 (MQ=255)
                                                                                                                                             aaCGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTgg                                          <  2:626599/113‑1 (MQ=255)
                                                                                                                                              aCGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGgaga    >  2:454991/1‑150 (MQ=255)
                                                                                                                                              aCGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTAGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCCGGTATGCATGAGAGACACCATCCACTTCCATACCTGgaga    <  1:1567532/150‑1 (MQ=255)
                                                                                                                                                gAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGc  <  2:1304427/150‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
TGTGACCTCGACCCGGGGAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGC  >  NC_002947/6129071‑6129364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: