Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 673,782 C→T 6.3% L110L (CTG→CTA)  PP_0575 ← membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947673,7820CT 6.3% 214.3 / 2.6 73L110L (CTG→CTA) PP_0575membrane protein
Reads supporting (aligned to +/- strand):  ref base C (34/34);  new base T (2/3);  total (36/37)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGGAAGGGTTATTGGATCCATACGGCCGTTAGAAGAAAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCGGCGCCGAAGCGGCCGAGCATGTAGCCTGGCAGGGTCAGCAGCATGAC  >  NC_002947/673633‑673931
                                                                                                                                                     |                                                                                                                                                     
tGGAAGGGTTATTGGATCCATACGGCCGTTAGAAGAAAACCTGATAACACATAGGGGACGAACGCCTGCTTGTAGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTc                                                                                                                                                       >  1:579149/1‑150 (MQ=255)
      ggTTATTGGATCCATACGGCCGTTAGAAGAAAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGc                                                                                                                                                 >  1:1081762/1‑150 (MQ=255)
      ggTTATTGGATCCATACGGCCGTTAGAAGAAAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGc                                                                                                                                                 <  2:1564201/150‑1 (MQ=255)
       gTTATTGGATCCATACGGCCGTTAGAAGAAAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGcc                                                                                                                                                >  2:1066601/1‑150 (MQ=255)
           ttGGATCCATACGGCCGTTAGAAGAAAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGAc                                                                                                                                            <  1:1070361/150‑1 (MQ=255)
           ttGGATCCATACGGCCGTTAGAAGAAAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGAc                                                                                                                                            <  1:1066601/150‑1 (MQ=255)
           ttGGATCCATACGGCCGTTAGAAGAAAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGAc                                                                                                                                            <  1:1085322/150‑1 (MQ=255)
            tGGATCCATACGGCCGTTAGAAGAAAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTTAGTAGCCAGAcc                                                                                                                                           >  1:75698/1‑150 (MQ=255)
            tGGATCCATACGGCCGTTAGAAGAAAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTTAGTAGCCAGAcc                                                                                                                                           >  1:895087/1‑150 (MQ=255)
              gATCCATACGGCCGTTAGAAGAAAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAg                                                                                                                                         <  1:552457/150‑1 (MQ=255)
                   aTACGGCCGTTAGAAGAAAACCTGATAACACATAGGGGACGAACGCCTGCTTGTAGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAg                                                                                                                                    <  2:579149/150‑1 (MQ=255)
                    tACGGCCGTTAGAAGAAAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGTCGGCGGCGGGTCAGTAGCCAGACCAGTACAGt                                                                                                                                   >  2:245550/1‑150 (MQ=255)
                       ggCCGTTAGAAGAAAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTTAGTAGCCAGACCAGTACAGTGac                                                                                                                                <  2:895087/150‑1 (MQ=255)
                       ggCCGTTAGAAGAAAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTTAGTAGCCAGACCAGTACAGTGac                                                                                                                                <  2:75698/150‑1 (MQ=255)
                                aagaaAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAg                                                                                                                                    <  2:1513398/137‑1 (MQ=255)
                                aagaaAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAg                                                                                                                                    >  1:1513398/1‑137 (MQ=255)
                                  gaaAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACAcc                                                                                                                             <  1:615777/142‑1 (MQ=255)
                                  gaaAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACAcc                                                                                                                             >  2:615777/1‑142 (MQ=255)
                                  gaaAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCaa                                                                                                                     <  1:964135/150‑1 (MQ=255)
                                              acacATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGa                                                                                                         <  1:743199/150‑1 (MQ=255)
                                               cacaTAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAg                                                                                                        >  1:227803/1‑150 (MQ=255)
                                                          cGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCg                                                                                             <  1:224778/150‑1 (MQ=255)
                                                           gAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAg                                                                                                                                              <  1:1199782/100‑1 (MQ=255)
                                                           gAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAg                                                                                                                                              >  2:1199782/1‑100 (MQ=255)
                                                           gAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCgg                                                                                            >  2:1292604/1‑150 (MQ=255)
                                                           gAACGCCTGCTTGTCGCCCATCTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCgg                                                                                            >  1:48914/1‑150 (MQ=255)
                                                                ccTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCtgg                                                                                       >  2:95153/1‑150 (MQ=255)
                                                                 cTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGa                                                                                                                                             >  2:706588/1‑95 (MQ=255)
                                                                 cTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCcgc                                                                                                                          >  1:1375797/1‑114 (MQ=255)
                                                                 cTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCcgc                                                                                                                          <  2:1375797/114‑1 (MQ=255)
                                                                 cTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTGGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGa                                                                                                                                             <  1:706588/95‑1 (MQ=255)
                                                                  tGCTTGTCGCCCATTTCTTAGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCtggtg                                                                                     <  2:1081762/150‑1 (MQ=255)
                                                                    cTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCa                                                                                                                                               <  2:837946/90‑1 (MQ=255)
                                                                    cTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCa                                                                                                                                               >  1:837946/1‑90 (MQ=255)
                                                                       gTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTggccag                                                                                <  1:1292604/150‑1 (MQ=255)
                                                                        tCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTggccagg                                                                               <  1:881863/150‑1 (MQ=255)
                                                                          gCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTggccagggc                                                                             <  2:4536/150‑1 (MQ=255)
                                                                           cccATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGca                                                                                                      <  1:158381/124‑1 (MQ=255)
                                                                           cccATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGca                                                                                                      >  2:158381/1‑124 (MQ=255)
                                                                            ccATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTggccagggcca                                                                           >  2:1364294/1‑150 (MQ=255)
                                                                             cATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCtggt                                                                                      >  1:1596359/1‑138 (MQ=255)
                                                                             cATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCtggt                                                                                      <  2:1596359/138‑1 (MQ=255)
                                                                                   ttcGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCtg                                                                                        <  2:1120118/130‑1 (MQ=255)
                                                                                   ttcGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCtg                                                                                        >  1:1120118/1‑130 (MQ=255)
                                                                                   ttcGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGcc                                                                    <  1:245550/150‑1 (MQ=255)
                                                                                           gggCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCg                                                                                             <  2:288104/117‑1 (MQ=255)
                                                                                           gggCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCg                                                                                             >  1:288104/1‑117 (MQ=255)
                                                                                              ccTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTa                                                                                                                                                   <  1:1564460/60‑1 (MQ=255)
                                                                                              ccTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTa                                                                                                                                                   >  2:1564460/1‑60 (MQ=255)
                                                                                                tGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCtggtg                                                                                     <  2:697813/120‑1 (MQ=255)
                                                                                                tGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCtggtg                                                                                     >  1:697813/1‑120 (MQ=255)
                                                                                                   aaaCGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGAcgtcg                                                    >  2:1055350/1‑150 (MQ=255)
                                                                                                       gCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCgg                                                >  2:1150058/1‑150 (MQ=255)
                                                                                                       gCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCgg                                                >  2:392596/1‑150 (MQ=255)
                                                                                                       gCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGAGCCCGTCAGCTTGACGTCGTCgg                                                >  1:902810/1‑150 (MQ=255)
                                                                                                          tatatACCTGGGGGTTGAGCAGAGTCCACCGGCGGCGGCGGGTTACTAGTCAGACCACTACCGTGACACCCGCGCCAATGAAGGTGCCGAGCACATAGTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCGgcgc                                             <  2:48914/146‑1 (MQ=255)
                                                                                                           cttTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCGGCGcc                                            >  2:1320996/1‑150 (MQ=255)
                                                                                                                 cTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGccc                                                                   >  2:1184817/1‑121 (MQ=255)
                                                                                                                 cTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCGGCGCCGAAGCg                                      >  2:165435/1‑150 (MQ=255)
                                                                                                                 cTTGGGGCTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGccc                                                                   <  1:1184817/121‑1 (MQ=255)
                                                                                                                  ttGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTCCGGGCTAGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCGGCGCCGAAGCgg                                     >  2:1456316/1‑150 (MQ=255)
                                                                                                                   tGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCGGCGCCGAAGCGGc                                    <  1:95153/150‑1 (MQ=255)
                                                                                                                     gggTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTggccaggg                                                                              <  2:209942/106‑1 (MQ=255)
                                                                                                                     gggTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTggccaggg                                                                              >  1:209942/1‑106 (MQ=255)
                                                                                                                     gggTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCGGCGCCGAAGCGGCCg                                  <  1:1364294/150‑1 (MQ=255)
                                                                                                                          gAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCGGCGCCGAAGCGGCCGAGCAt                             <  1:1320996/150‑1 (MQ=255)
                                                                                                                                  tCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGAc                                                        <  1:1239172/115‑1 (MQ=255)
                                                                                                                                  tCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGAc                                                        >  2:1239172/1‑115 (MQ=255)
                                                                                                                                  tCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCGGCGCCGAAGCGGCCGa                                 >  2:676116/1‑138 (MQ=255)
                                                                                                                                  tCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCGGCGCCGAAGCGGCCGa                                 <  1:676116/138‑1 (MQ=255)
                                                                                                                                    cacaGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCGGCGCCGAAGCGGCCGAGCATGTAGCCTGGc                   >  1:1316598/1‑150 (MQ=255)
                                                                                                                                         gcggcggcgGGTCAGTAGCCAGACCAGTACAGTGACGCCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCGGCGCCGAAGCGGCCGAGCATGTAGCCTGGCAGGGt              <  2:544003/150‑1 (MQ=255)
                                                                                                                                              ggcggGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCGGCGCCGAAGCGGCCGAGCATGTAGCCTGGCAGGGTcagca         >  1:1477412/1‑150 (MQ=255)
                                                                                                                                                cggGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCGGCGCCGAAGCGGCCGAGCATGTAGCCTGGCAGGGTCagcagc       >  1:122215/1‑150 (MQ=255)
                                                                                                                                                     cAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCGGCGCCGAAGCGGCCGAGCATGTAGCCTGGCAGGGTCAGCAGCATGAc  <  2:1477412/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TGGAAGGGTTATTGGATCCATACGGCCGTTAGAAGAAAACCTGATAACACATAGGGGACGAACGCCTGCTTGTCGCCCATTTCTTCGGTCAGGGCCTGCAAACGCTTCTTTACCTTGGGGTTGAGCAGAGTCCACAGGCGGCGGCGGGTCAGTAGCCAGACCAGTACAGTGACACCCGCGCCAATGAAGGTGCCGAGCACATATTGCGGGCTGGTGGCCAGGGCCAGGGCGCCCATCAGCTTGACGTCGTCGGCGCCGAAGCGGCCGAGCATGTAGCCTGGCAGGGTCAGCAGCATGAC  >  NC_002947/673633‑673931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑