Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 826,689 | C→G | 8.2% | intergenic (‑88/‑124) | PP_0710 ← / → ycaC‑I | hypothetical protein/putative hydrolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 826,689 | 0 | C | G | 8.2% | 166.7 / 5.7 | 57 | intergenic (‑88/‑124) | PP_0710/ycaC‑I | hypothetical protein/putative hydrolase |
Reads supporting (aligned to +/- strand): ref base C (27/25); new base G (3/2); total (30/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.23e-01 |
TTGCTGGCGAACGCCGCGACGAGGTCGGCGGCGGCTTGCCGCACTTGAAGTGTCTGGTCCACGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACTCCCAACCCGCTGAAGCAAGGAGATCCACTGTGGCCTTCCAATACAAGCGTCTGG > NC_002947/826540‑826837 | ttGCTGGCGAACGCCGCGACGAGGTCGGCGGCGGCTTGCCGCACTTGAAGTGTCTGGTCCACGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATc < 2:618607/150‑1 (MQ=255) gAACGCCGCGACGAGGTCGGCGGCGGCTTGCCGCACTTGAAGTGTCTGGTCCACGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGa < 2:1540160/150‑1 (MQ=255) gAACGCCGCGACGAGGTCGGCGGCGGCTTGCCGCACTTGAAGTGTCTGGTCCACGGGAGTGGCCTCACGGGTTTTTTGTGATTGTGGTGAAGCTATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGa > 1:1013611/1‑150 (MQ=255) ccgcGACGAGGTCGGCGGCGGCTTGCCGCACTTGAAGTGTCGGGTCCACGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAAttt < 2:475742/150‑1 (MQ=255) gcgACGAGGTCGGCGGCGGCTTGCCGCACTTGAAGTGTCTGGTCCACGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTtgt > 2:1067681/1‑150 (MQ=255) acgaGGTCGGCGGCGGCTTGCCGCACTTGAAGTGTCTGGTCCACGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGaa < 2:1337455/150‑1 (MQ=255) acgaGGCCGGCGGCGGGTTGCTGCACTTGAAGGTTCTGGTCCACGGGAGGTGCCTCACGGTTTTTTTGTGAGTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGaa < 2:178842/150‑1 (MQ=255) gTCGGCGGCGGCTTGCCGCACTTGAAGTGTCTGGTCCACGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGAt > 1:752826/1‑150 (MQ=255) cGCACTTGAAGTGTCTGGTCCACGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTa < 1:1067681/150‑1 (MQ=255) cACTTGAAGTGTCTGGTCCACGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACa < 1:580012/150‑1 (MQ=255) ttGAAGTGTCTGGTCCACGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATGAGTTCAGAAATTTGTGAACTGATGGGGCACAggg > 1:1189035/1‑140 (MQ=255) ttGAAGTGTCTGGTCCACGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATGAGTTCAGAAATTTGTGAACTGATGGGGCACAggg < 2:1189035/140‑1 (MQ=255) ttGAAGTGTCTGGTCCACGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGc > 2:939618/1‑150 (MQ=255) gAAGTGTCTGGTCCACGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGTTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCaa > 2:211739/1‑150 (MQ=255) gtCTGGTCCACGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGCTTTTGGTGGCGGTGGGCGAGGCGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGa < 1:1601466/150‑1 (MQ=255) gtCTGGTCCACGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGa < 2:752826/150‑1 (MQ=255) gTCCACGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGAc > 2:280512/1‑150 (MQ=255) aCGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGtc > 1:1195560/1‑150 (MQ=255) cGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGtct > 2:1320993/1‑150 (MQ=255) gggAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGtctc > 1:1601634/1‑150 (MQ=255) gAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGtctctc < 1:939618/150‑1 (MQ=255) gTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTccc < 1:63908/150‑1 (MQ=255) tCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTc > 1:737618/1‑150 (MQ=255) ggTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGTCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGATATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATc > 2:25117/1‑150 (MQ=255) gTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTtgt > 2:451406/1‑88 (MQ=255) gTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTtgt < 1:451406/88‑1 (MQ=255) gTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATcc < 2:1601634/150‑1 (MQ=255) gTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATcc > 2:564267/1‑150 (MQ=255) ttttttGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCtt < 1:280512/150‑1 (MQ=255) tgATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATc < 1:915733/140‑1 (MQ=255) tgATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATc > 2:915733/1‑140 (MQ=255) aTTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGATGGTCTCTCCCACCCTCCATCTTTGCCTACGCt > 1:90409/1‑150 (MQ=255) gtgAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGtctct > 2:894853/1‑119 (MQ=255) gtgAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGtctct < 1:894853/119‑1 (MQ=255) gtgAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACt > 1:1110479/1‑150 (MQ=255) gtgAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACt > 2:997290/1‑150 (MQ=255) gCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATGAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCa > 2:1378775/1‑87 (MQ=255) gCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATGAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCa < 1:1378775/87‑1 (MQ=255) gCGAATCTGGTGGCGGTGAGCGAGGGGAAAAATCGCTGGCGGCAAATATTGAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACACTTATACTCCCaa > 2:432689/1‑150 (MQ=255) gATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACTCCCAAcc > 1:436343/1‑150 (MQ=255) tCTGGTGGCTGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACTCCCAACCCGc < 1:564267/150‑1 (MQ=255) gtggCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACTCCCAACCCGCTGaa < 2:436343/150‑1 (MQ=255) ggTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACTCCCAACCCGCTGAAGCAAg < 2:737618/150‑1 (MQ=255) gTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACTCCCAACCCGCTGAAGCAAgg < 1:1320993/150‑1 (MQ=255) gggAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATcc < 1:417874/104‑1 (MQ=255) gggAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATcc > 2:417874/1‑104 (MQ=255) gggAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACTCCCAACCCGCTGAAGCAAGGAGATCCACt < 1:211739/150‑1 (MQ=255) ggAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACTCCCAACCCGCTGAAGCAAGGAGATCCACtg > 1:7949/1‑150 (MQ=255) gAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGc > 1:651928/1‑112 (MQ=255) gAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGc < 2:651928/112‑1 (MQ=255) aTCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACTCCCAACCCGCTGAAGCAAGGAGATCCACTGTGGCCt < 1:25117/150‑1 (MQ=255) tGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACTCCCAACCCGCTGAAGCAAGGAGATCCACTGTGGCCTTCCaa > 2:1246958/1‑150 (MQ=255) cggcAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACTCCCAACCCGCTGAAGCAAGGAGATCCACTGTGGCCTTCCAATAc < 2:7949/150‑1 (MQ=255) ggcAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACTCCCAACCCGCTGAAGCAAGGAGATCCACTGTGGCCTTCCAATACa > 1:1057286/1‑150 (MQ=255) gcAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACTCCCAACCCGCTGAAGCAAGGAGATCCACTGTGGCCTTCCAATACaa < 1:997290/150‑1 (MQ=255) cAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACTCCCAACCCGCTGAAGCAAGGAGATCCACTGTGGCCTTCCAATACAAg > 2:433854/1‑150 (MQ=255) atCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACTCCCAACCCGCTGAAGCAAGGAGATCCACTGTGGCCTTCCAATACAAGCGTCTg > 1:542080/1‑150 (MQ=255) tCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACTCCCAACCCGCTGAAGCAAGGAGATCCACTGTGGCCTTCCAATACAAGCGTCTgg > 1:659003/1‑150 (MQ=255) | TTGCTGGCGAACGCCGCGACGAGGTCGGCGGCGGCTTGCCGCACTTGAAGTGTCTGGTCCACGGGAGTGGCCTCACGGTTTTTTTGTGATTGTGGTGAAGCGATTCTGGTGGCGGTGGGCGAGGGGAAAAATCGCTGGCGGCAAATAATCAGTTCAGAAATTTGTGAACTGATGGGGCACAGGGCAGTACAGGCAAGCCGACTGACGGTCTCTCCCACCCTCCATCCTTGCCTACGCTGATACTCCCAACCCGCTGAAGCAAGGAGATCCACTGTGGCCTTCCAATACAAGCGTCTGG > NC_002947/826540‑826837 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |