| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,123,943 | T→A | 8.5% | intergenic (‑138/+83) | PP_mr13 ← / ← gcvT‑I | cspA regulatory region/aminomethyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,123,943 | 0 | T | A | 8.5% | 180.0 / 6.7 | 59 | intergenic (‑138/+83) | PP_mr13/gcvT‑I | cspA regulatory region/aminomethyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (30/24); new base A (3/2); total (33/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 | |||||||||||
GCCCAGGTCACGAACTGTTGCGACCCATGCAAACACAGTGCAGTGACTCTACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCT > NC_002947/1123799‑1124084 | gCCCAGGTCACGAACTGTTGCGACCCATGCAAACACAGTGCAGTGACTCTACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCgcctggcct > 1:1516075/1‑150 (MQ=255) cACGAACTGTTGCGACCCATGCAAACACAGTGCAGTGACTCTACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCAGGCCAGGCGCCAt < 2:1447939/150‑1 (MQ=255) aCGAACTGTTGCGACCCATGCAAACACAGTGCAGTGACTCTACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATg < 1:1246888/150‑1 (MQ=255) gAACTGTTGCGACCCATGCAAACACAGTGCAGTGACTCTACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGtt > 2:1531147/1‑150 (MQ=255) gACCCATGCAAACACAGTGCAGTGACTCTACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTAt > 1:1582996/1‑150 (MQ=255) aCCCATGCAAACACAGTGCAGTGACTCTACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTAtt > 2:103925/1‑150 (MQ=255) cccATGCAAACACAGTGCAGTGACTCTACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTg > 1:153168/1‑150 (MQ=255) aaaCACAGTGCAGTGACTCTACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGt > 2:50668/1‑150 (MQ=255) aaCACAGTGCAGTGACTCTACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCACAAGTTATTGGGCAGGtt > 1:157547/1‑150 (MQ=255) acacAGTGCAGTGACTCTACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGCTTc < 2:153168/150‑1 (MQ=255) gtgcattgACTCTACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGaaaa < 2:1582996/150‑1 (MQ=255) tgcagtgACTCTACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAAc < 1:1081917/150‑1 (MQ=255) tctACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGACATGGCGCCAGGCCAGGCGCCATgcc > 1:239886/1‑112 (MQ=255) tctACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGACATGGCGCCAGGCCAGGCGCCATgcc < 2:239886/114‑3 (MQ=255) tACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCgcctggcc > 2:901896/1‑100 (MQ=255) tACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCgcctggcc < 1:901896/100‑1 (MQ=255) cAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTAtgctg > 1:314164/1‑150 (MQ=255) tctcGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTAtg < 2:1281870/143‑1 (MQ=255) tctcGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTAtg > 1:1281870/1‑143 (MQ=255) tctcGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCa > 1:954057/1‑150 (MQ=255) cGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGAGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCtt < 2:729758/150‑1 (MQ=255) gAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCgcctggcct < 2:346105/84‑1 (MQ=255) gAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCgcctggcct > 1:346105/1‑84 (MQ=255) aaaaaCAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAat < 1:615280/125‑1 (MQ=255) aaaaaCAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAat > 2:615280/1‑125 (MQ=255) aaaaaCAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTca < 2:1516075/150‑1 (MQ=255) aaaaCAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCctggcctggc < 1:293565/85‑1 (MQ=255) aaaaCAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCctggcctggc > 2:293565/1‑85 (MQ=255) aaaCAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGTATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGTCCAAAACCTTcaca > 2:1185236/1‑150 (MQ=255) aGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGc > 1:833666/1‑102 (MQ=255) aGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGc < 2:833666/102‑1 (MQ=255) cTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGttt < 2:314164/150‑1 (MQ=255) ggAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGgta > 2:106827/1‑150 (MQ=255) gAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGgtag < 1:1531147/150‑1 (MQ=255) gAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGgtag > 2:1298671/1‑150 (MQ=255) aaCTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTaa > 1:440247/1‑150 (MQ=255) ggTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACgtggtg > 2:1485325/1‑150 (MQ=255) tttGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTc < 1:1298671/150‑1 (MQ=255) ccGATAACCGACCGGTTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTAtgctgc < 2:949789/99‑1 (MQ=255) ccGATAACCGACCGGTTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTAtgctgc > 1:949789/1‑99 (MQ=255) gATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGaaa > 1:1053696/1‑150 (MQ=255) cgaccgaTTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAat > 2:1303301/1‑78 (MQ=255) cgaccgaTTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAat < 1:1303301/78‑1 (MQ=255) cgaccgaTTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCtt > 1:1017413/1‑101 (MQ=255) cgaccgaTTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCtt < 2:1017413/101‑1 (MQ=255) gaccgaTTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACgtggt < 1:120331/134‑1 (MQ=255) gaccgaTTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACgtggt > 2:120331/1‑134 (MQ=255) gaccgaTTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACgtg < 2:1363403/132‑1 (MQ=255) gaccgaTTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACgtg > 1:1363403/1‑132 (MQ=255) gaccgaTTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCAttt > 2:560696/1‑150 (MQ=255) accgaTTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTc > 2:1253721/1‑136 (MQ=255) accgaTTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTc < 1:1253721/136‑1 (MQ=255) gaTTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCt < 2:1494972/150‑1 (MQ=255) aTTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTaa < 1:1464751/123‑1 (MQ=255) aTTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTaa > 2:1464751/1‑123 (MQ=255) tCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGttt > 2:600539/1‑103 (MQ=255) tCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGttt < 1:600539/103‑1 (MQ=255) gAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCaa > 2:829974/1‑150 (MQ=255) aaCGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTAtt > 2:1599443/1‑42 (MQ=255) aaCGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTAtt < 1:1599443/42‑1 (MQ=255) aacATGGCGCCAGGCCAGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCa > 1:1414829/3‑150 (MQ=255) gCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTCCAACGGGATGTCCTGAAACTAATATGTCTATGCTGCCAGTAGGCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCAc < 1:1185236/150‑1 (MQ=255) cATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCAcc < 1:50668/150‑1 (MQ=255) cATGGCGCCAGGCCAGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCAcc > 2:718758/1‑150 (MQ=255) aTGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTACCCAGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACct > 1:15843/1‑150 (MQ=255) aTGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACct > 2:1621981/1‑150 (MQ=255) | GCCCAGGTCACGAACTGTTGCGACCCATGCAAACACAGTGCAGTGACTCTACGCCAACTCTCGAGCGAAAAACAAGCCCTTGGTCGTATGGAAAACTGGCGGTTTGCCGATAACCGACCGATTTGTCGGAAACGGCATGGCGCCTGGCCTGGCGCCATGTTCAAAAGTTATTGGGCAGGTTCGAAAACGAATATGTCTATGCTGCCCAAAACCTTCACAAAGCCGTTTCAGCCACGGTAGTAACGTGGTGTCACGAAAGGCATTTTGCTGACTTTCAAGGCCACCT > NC_002947/1123799‑1124084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |