| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 167,292 | C→A | 11.4% | intergenic (‑386/+34) | pntAA ← / ← gcdR | pyridine nucleotide transhydrogenase subunit alpha/gcdH transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 167,292 | 0 | C | A | 11.4% | 101.3 / 2.9 | 35 | intergenic (‑386/+34) | pntAA/gcdR | pyridine nucleotide transhydrogenase subunit alpha/gcdH transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (14/17); new base A (2/2); total (16/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 | |||||||||||
AGATTAGGAGAAAAAATCAAAAAAAAAGCGGCCAATTCGCTTACGACTAGTTGGATGTCGCAAAATAACCCGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGCGACGCCGACTCCACCTTGCGCTCTGGAATCATCAGA > NC_002947/167143‑167440 | aGATTAGGAGAAAAAAGCAAAAAAAAAGCGGCCAATTCGCTTACGACTAGTTGGATGTCGCAAAATAACCCGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATatacatac < 2:1480903/150‑1 (MQ=255) gagaAAAAATCAAAAAAAAAGCGGCCAATTCGCTTACGACTAGTTGGATGTCGCAAAATAACCCGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTa < 1:1342304/150‑1 (MQ=255) tCAAAAAAAAAGCGGCCAATTCGCTTACGACTAGTTGGATGTCGCAAAATAACCCGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTaa > 1:1136631/1‑150 (MQ=255) aaaaaaaaaGCGGCCAATTCGCTTACGACTAGTTGGATTTTTCAAAATAACCCGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTaaaa < 2:1620797/150‑1 (MQ=255) aaaaaaaaGCGGACAATTCGCTTACGACTAGTTGGATGTCGCAAAATAACCCGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAaat > 2:745696/1‑150 (MQ=255) cAATTCGCTTACGAATAGTTGGATGTCGCAAAATAACCCGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAgg < 1:745696/150‑1 (MQ=255) cTTACGACTAGTTGGATGTCGCAAAATAACCCGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAAtt > 1:1396808/1‑150 (MQ=255) aCGACTAGTTGGATGTCGCAAAATAACCCGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGc < 1:1409164/150‑1 (MQ=255) aCGACTAGTTGGATGTCGCAAAATAACCCGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGc > 2:71133/1‑150 (MQ=255) gATGTCGCAAAATAACCCGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTcc > 2:6004/1‑150 (MQ=255) tCGCAAAATAACCCGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGa < 1:1596517/150‑1 (MQ=255) cccGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGtt > 1:1574361/1‑95 (MQ=255) cccGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGtt < 2:1574361/95‑1 (MQ=255) ccGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAaata < 1:133163/101‑1 (MQ=255) ccGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAaata > 2:133163/1‑101 (MQ=255) cGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAg < 2:903640/150‑1 (MQ=255) tACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTgg > 1:731749/1‑150 (MQ=255) aCTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGc < 2:1396808/150‑1 (MQ=255) aGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTAc < 2:247424/150‑1 (MQ=255) aGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATAAATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTAc > 1:1513487/1‑150 (MQ=255) aCGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTgg < 2:1246183/142‑1 (MQ=255) aCGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTgg > 1:1246183/1‑142 (MQ=255) aCGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTAccag < 1:71133/150‑1 (MQ=255) gtTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATAAATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAg < 2:1513487/150‑1 (MQ=255) ttGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGct > 2:700735/1‑149 (MQ=255) gCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGCGAc < 1:700735/150‑1 (MQ=255) ttACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGCGACGcc > 2:316114/1‑150 (MQ=255) aCAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGCGACGCCGa < 1:6004/150‑1 (MQ=255) tttGCGAATATGCGACATATACATAAATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGCGACGCCGAc < 2:1088374/147‑1 (MQ=255) tttGCGAATATGCGACATATACATAAATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGCGACGCCGAc > 1:1088374/1‑147 (MQ=255) gCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGCGACGCCGACTCCAcc > 2:537749/1‑150 (MQ=255) gAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGCGACGCCGACTCCa > 2:512746/1‑146 (MQ=255) gAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGCGACGCCGACTCCa < 1:512746/146‑1 (MQ=255) gAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGCGACGCCGACTCCACCtt < 2:731749/150‑1 (MQ=255) atatGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGCGACGCCGACTCCACCTTgc < 1:316114/150‑1 (MQ=255) tatGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGCGACGCCGACTCCACCTTgcg > 2:59592/1‑150 (MQ=255) catacatCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGCGACGCCGACTCCACCTTGCGCTCTGGAatcatc > 1:1575484/1‑150 (MQ=255) atacatCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGCGACGCCGACTCCACCTTGCGCTCTGGAAtcatca > 1:630643/1‑150 (MQ=255) atacatCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGCGACGCCGACTCCACCTTGCGCTCTGGAAtcatca > 2:910327/1‑150 (MQ=255) acatCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGCGACGCCGACTCCACCTTGCGCTCTGGAATCATCAGa > 2:411440/1‑150 (MQ=255) | AGATTAGGAGAAAAAATCAAAAAAAAAGCGGCCAATTCGCTTACGACTAGTTGGATGTCGCAAAATAACCCGCAAAGCCGCGTACTGAGCACGGTTAAAGGGTGTTTTTGTGCTTGCGTTACAGTTTGCGAATATGCGACATATACATACATCTGTAGGTGTTTAAAATAATTGACTACAGGGTCAATTTGCCGCGTTTGTCCCTGAGCTATTTATGTAGGCCTGAGCCTGGCTTACCAGCCAGTCGCGAAAGGCGCGTAGCGACGCCGACTCCACCTTGCGCTCTGGAATCATCAGA > NC_002947/167143‑167440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |