| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,728,699 | C→T | 7.1% | intergenic (+51/+72) | cspA‑I → / ← PP_1523 | major cold shock protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,728,699 | 0 | C | T | 7.1% | 277.9 / 7.6 | 95 | intergenic (+51/+72) | cspA‑I/PP_1523 | major cold shock protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (35/51); new base T (3/4); total (38/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCC > NC_002947/1728553‑1728845 | gAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGt < 2:395969/150‑1 (MQ=255) aGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTg < 1:321083/150‑1 (MQ=255) ggCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCATCCAAGCCGAAAAA‑ATAG‑TGGGCCTCTAACCCGCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCt < 1:1434199/150‑1 (MQ=255) cATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCGTGGTGGCTGc < 2:1531401/150‑1 (MQ=255) cATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGc < 2:682011/150‑1 (MQ=255) cGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGAAGGGCCAGAAAGGCTTGCAAGCCGAAGAC‑GTAG‑TGGGCCTATGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAGGCAGCCACCGTGGTGGCTGcttc < 1:656335/150‑4 (MQ=255) tACCCTGGTCGAAGGGCTCAGGGTGCAGTCCTGCGGCCTGCAGGGCAAGAAAGGCCTGCAAGGCTAGCACGGTAG‑‑GGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGTG‑‑GCAGCCACCGTGGTGGCTGcttcgcgg < 1:443735/150‑8 (MQ=12) tACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACgg < 1:446724/150‑1 (MQ=255) aCCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACggg > 2:655756/1‑150 (MQ=255) gTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGc > 1:1169124/1‑150 (MQ=255) cGAAGGGCAGCGGGTGGACTACCCCTGCGTGCAGGGCCAGAAAGCCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTCGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGccc < 2:691650/150‑1 (MQ=255) gTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTa < 2:925068‑M2/150‑2 (MQ=255) gTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTa < 1:1453917‑M2/150‑2 (MQ=255) ggAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTaaa < 1:376137/150‑1 (MQ=255) ggAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTaaa < 2:985014/150‑1 (MQ=255) gAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAAc < 1:1050154/150‑1 (MQ=255) gAGTACGCCTGCGTGCAGGGCCAGAAAGGCATGC‑AGGCGCTGCA‑GGAGCTGGACCGCTGAGCCTCTGGTTTCCCGCGGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAAc < 1:1600029/150‑1 (MQ=255) gAGTACGCCTGCGTGCAGGGACAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAAc < 2:648513/150‑1 (MQ=255) aCGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCAt < 1:1048375/150‑1 (MQ=255) cGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGccc < 2:1216754/129‑1 (MQ=255) cGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGccc > 1:1216754/1‑129 (MQ=255) cGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCAtt < 2:1441435/150‑1 (MQ=255) gCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTc < 1:1054124/150‑1 (MQ=255) gCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCAACGGC‑ATTG‑ATGCGCACTGAGCCGCTGGTTTCAAGAACAAGGTTCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTc < 1:365534/150‑1 (MQ=255) cTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTCGGAGCGGGCTTTCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCt > 2:1004824/1‑150 (MQ=255) cTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTTCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCt > 2:497841/1‑150 (MQ=255) cTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTcgc < 1:828297/134‑1 (MQ=255) cTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTcgc > 2:828297/1‑134 (MQ=255) cTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCt > 1:955839/1‑150 (MQ=255) cGTGCAGGGCCAGAAAGGCCTGCAAGGGGAAGAC‑GTAG‑TGGGGCTCTGAGCCTCTGGTTTCAAGCAGTAGGAGCGAGTTTGATTAGGAAGAAGCTTCCTAGGTGGTTGTCACGGGCATTGACCGTATTCGCGGGTAAACCCATTCCTACa < 2:297957/150‑1 (MQ=255) tGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGa > 1:459177/1‑150 (MQ=255) aGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGt < 2:881406/98‑1 (MQ=255) aGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGt > 1:881406/1‑98 (MQ=255) ggCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGa < 2:459177/150‑1 (MQ=255) ggCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGa < 2:1453917/150‑1 (MQ=255) aGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACgg < 2:492857/99‑1 (MQ=255) aGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACgg > 1:492857/1‑99 (MQ=255) ccTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGaaa > 1:548433/1‑136 (MQ=255) ccTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGaaa < 2:548433/136‑1 (MQ=255) cTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCg > 2:1066080/1‑150 (MQ=255) tGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCGTGGTGGCTGctt < 2:1159241/91‑3 (MQ=39) tGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCGTGGTGGCTGctt > 1:1159241/1‑89 (MQ=39) tGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGt > 2:309790/1‑150 (MQ=255) tGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGt > 1:1397886/1‑150 (MQ=255) gCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGtt > 2:907701/1‑150 (MQ=255) gCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGtt < 1:655756/150‑1 (MQ=255) gAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCATCCAAGCAGCCACCATGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGCGCAAGCCTGCCGATTccttgt > 1:611661/1‑145 (MQ=255) aC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTAc < 1:497841/150‑1 (MQ=255) gTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGc < 1:813834/129‑1 (MQ=255) gTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGc > 2:813834/1‑129 (MQ=255) gggCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGt < 1:1034406/150‑1 (MQ=255) ggcccTCTCTGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGACACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGt < 1:160983/147‑1 (MQ=255) gatccTCTAAGCTTCGGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGt < 2:1169124/147‑1 (MQ=255) ggCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAAc > 1:665852/1‑99 (MQ=255) ggCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAAc < 2:665852/99‑1 (MQ=255) ctGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTc < 1:907701/150‑1 (MQ=255) ccTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAAc > 1:1146765/1‑89 (MQ=255) ccTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAAc < 2:1146765/89‑1 (MQ=255) tctGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAg > 2:579614/1‑110 (MQ=255) tctGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAg < 1:579614/110‑1 (MQ=255) tGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAAc < 1:891068/101‑1 (MQ=255) tGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAAc > 2:891068/1‑101 (MQ=255) tttCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGt > 2:548742/1‑149 (MQ=255) tttCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGt < 1:548742/149‑1 (MQ=255) aGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGGTGCCACGGGCACAGCCCGTATGCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCCgcgc > 2:214152/1‑150 (MQ=255) aGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTAc < 2:401440/87‑1 (MQ=255) aGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTAc > 1:401440/1‑87 (MQ=255) aGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGgcgc > 2:63879/1‑150 (MQ=255) gCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCt < 2:1128408/150‑1 (MQ=255) cGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCatgat > 1:846389/1‑113 (MQ=255) cGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCatgat < 2:846389/113‑1 (MQ=255) gcaGGAGCGGGCTTGCCCGCGAAGCAGCCACCAAGCTGGCTGCCACGGTCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGAt < 2:611661/148‑1 (MQ=255) gTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGttt < 1:997237/106‑1 (MQ=255) gTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGttt > 2:997237/1‑106 (MQ=255) ggAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCAtt < 1:1067092/75‑1 (MQ=255) ggAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCAtt > 2:1067092/1‑75 (MQ=255) ggAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCctc > 2:250574/1‑129 (MQ=255) ggAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCctc < 1:250574/129‑1 (MQ=255) ggAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCg > 2:1422167/1‑150 (MQ=255) gAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAAc > 1:1527256/1‑69 (MQ=255) gAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAAc < 2:1527256/69‑1 (MQ=255) aGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGa < 1:1066080/150‑1 (MQ=255) gCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCatgatg > 2:929496/1‑107 (MQ=255) gCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCatgatg < 1:929496/107‑1 (MQ=255) gCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGAc > 2:977286/1‑150 (MQ=255) ggCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGt < 1:341038/114‑1 (MQ=255) ggCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGt > 2:341038/1‑114 (MQ=255) cTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTaagcccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcggcttgcaggcctttctggccctgcacgcaggcgtactcc < 1:361671‑M2/150‑93 (MQ=255) ttGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTaagcccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcggcttgcaggcctttctggccctgcacgcaggcgtactcca < 2:575669‑M2/150‑94 (MQ=255) cccGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTc < 1:1004824/150‑1 (MQ=255) ccGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCa > 1:155030/1‑150 (MQ=255) gtggcagcCACCGTGGTGGCTGCCACACCCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCAt > 1:863049/4‑150 (MQ=255) agcagcCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCAtct < 2:1397886/150‑1 (MQ=255) cagcCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCAtcttc < 1:1422167/150‑1 (MQ=255) ccaccaCGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCttcttc > 1:437520/1‑150 (MQ=255) caccacGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTaagcccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcggcttgcaggcctttctggccctgcacgcaggcgtactccacccgctgcccttcgac > 1:575669‑M2/1‑41 (MQ=255) caccacGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGAGTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCCTCTTCTTcc > 2:183681/1‑150 (MQ=255) accacGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGc < 2:880304/68‑1 (MQ=255) accacGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGc > 1:880304/1‑68 (MQ=255) ccacGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTcccc < 1:63879/150‑1 (MQ=255) | GAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGAC‑GTAG‑TGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCC > NC_002947/1728553‑1728845 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |